SRR3548850_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548850_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335556
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	2943	0.8770518184744126	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2129	0.6344693583187306	No Hit
AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	1592	0.47443645770005605	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC	1575	0.46937023924471627	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT	1383	0.412151771984408	No Hit
AAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	1304	0.38860875680959367	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT	823	0.24526457580850886	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	535	0.15943687491804648	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	482	0.14364219385139887	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT	467	0.1391720010966873	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	429	0.1278475127847513	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT	366	0.10907270321496264	No Hit
CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	355	0.10579456186150747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCCG	35	1.208482E-7	45.000004	1
CGACACG	35	1.208482E-7	45.000004	1
CCGCATG	35	1.208482E-7	45.000004	1
ACGCGCA	35	1.208482E-7	45.000004	15
ATTTACG	20	7.0261396E-4	45.0	25
AACGTAG	25	3.8848826E-5	45.0	1
CGGGTCA	25	3.8848826E-5	45.0	6
TCGTTCA	20	7.0261396E-4	45.0	16
ACCGGCT	20	7.0261396E-4	45.0	45
TCCGCTG	25	3.8848826E-5	45.0	41
CTCGTTC	20	7.0261396E-4	45.0	15
ATAGGCG	25	3.8848826E-5	45.0	1
ACGTTCA	20	7.0261396E-4	45.0	19
TCCGAGC	20	7.0261396E-4	45.0	17
TAGACCG	20	7.0261396E-4	45.0	35
CGCATCA	20	7.0261396E-4	45.0	20
AGCTTAG	20	7.0261396E-4	45.0	1
GACCGAT	40	6.7902874E-9	45.0	9
TAAACGG	45	3.8380676E-10	45.0	2
ATAGACG	25	3.8848826E-5	45.0	1