##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548850_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 335556 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.391371335932007 31.0 31.0 34.0 30.0 34.0 2 31.54654662709056 31.0 31.0 34.0 30.0 34.0 3 31.766730441416634 31.0 31.0 34.0 30.0 34.0 4 35.606906149793176 37.0 35.0 37.0 33.0 37.0 5 35.22767585738297 37.0 35.0 37.0 33.0 37.0 6 35.22965168258055 37.0 35.0 37.0 32.0 37.0 7 35.231380157112376 37.0 35.0 37.0 32.0 37.0 8 35.548421127919035 37.0 35.0 37.0 33.0 37.0 9 36.37903956418601 39.0 37.0 39.0 32.0 39.0 10 36.03167578585989 38.0 35.0 39.0 31.0 39.0 11 36.27416586203197 38.0 35.0 39.0 32.0 39.0 12 36.04058637008428 37.0 35.0 39.0 32.0 39.0 13 35.787364851172384 37.0 35.0 39.0 31.0 39.0 14 36.80791581733004 38.0 35.0 40.0 31.0 41.0 15 36.845036297965166 38.0 35.0 40.0 32.0 41.0 16 36.864672364672366 38.0 35.0 40.0 32.0 41.0 17 36.837988294055236 38.0 35.0 40.0 32.0 41.0 18 36.6660318992955 38.0 35.0 40.0 31.0 41.0 19 36.68765571171429 38.0 35.0 40.0 31.0 41.0 20 36.63060115152165 38.0 35.0 40.0 31.0 41.0 21 36.669968649048144 38.0 35.0 40.0 31.0 41.0 22 36.627850492913254 38.0 35.0 40.0 31.0 41.0 23 36.53594332987638 38.0 35.0 40.0 31.0 41.0 24 36.218690769946 38.0 35.0 40.0 30.0 41.0 25 36.334027703274565 38.0 35.0 40.0 31.0 41.0 26 36.253152975956326 38.0 35.0 40.0 30.0 41.0 27 36.17764844020074 38.0 35.0 40.0 30.0 41.0 28 36.15062463493426 38.0 35.0 40.0 30.0 41.0 29 35.929484199358676 38.0 35.0 40.0 30.0 41.0 30 35.84722073215797 38.0 35.0 40.0 29.0 41.0 31 35.70289012862234 38.0 34.0 40.0 29.0 41.0 32 35.676706719593746 38.0 34.0 40.0 29.0 41.0 33 35.585625052152245 38.0 34.0 40.0 29.0 41.0 34 35.56644196497753 38.0 34.0 40.0 29.0 41.0 35 35.45843614776669 38.0 34.0 40.0 28.0 41.0 36 35.33399492186103 38.0 34.0 40.0 27.0 41.0 37 35.20342953188141 38.0 34.0 40.0 27.0 41.0 38 35.13312234023531 38.0 34.0 40.0 27.0 41.0 39 35.11302435361013 38.0 34.0 40.0 27.0 41.0 40 34.95642456102707 37.0 34.0 40.0 26.0 41.0 41 35.049711523560894 38.0 34.0 40.0 26.0 41.0 42 34.974671887851805 37.0 34.0 40.0 26.0 41.0 43 34.928810690316965 37.0 34.0 40.0 26.0 41.0 44 34.77630559429723 37.0 34.0 40.0 26.0 41.0 45 34.51988639750146 37.0 33.0 40.0 24.0 41.0 46 34.48115664747464 37.0 33.0 40.0 24.0 41.0 47 34.36718163287201 37.0 33.0 40.0 24.0 41.0 48 34.391341534646976 37.0 33.0 40.0 24.0 41.0 49 34.26887017368189 37.0 33.0 40.0 24.0 41.0 50 34.007530784727436 36.0 33.0 40.0 23.0 41.0 51 32.166818653220325 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 5.0 11 6.0 12 7.0 13 4.0 14 14.0 15 26.0 16 62.0 17 109.0 18 279.0 19 527.0 20 875.0 21 1314.0 22 1871.0 23 2392.0 24 2936.0 25 3132.0 26 3550.0 27 4332.0 28 5330.0 29 6601.0 30 8562.0 31 11029.0 32 14206.0 33 19994.0 34 32170.0 35 36036.0 36 33233.0 37 45151.0 38 58584.0 39 43212.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.737653327611486 33.589326371753145 19.340735972535136 25.33228432810023 2 23.835067768122162 33.41439282861877 19.671530236383795 23.079009166875274 3 20.538151605097212 33.04813503558273 21.171726924865002 25.241986434455054 4 20.35874786920812 32.8973405333238 19.911728593736964 26.83218300373112 5 17.05378535922469 35.14286736044058 19.10798793643982 28.69535934389491 6 20.2970592091931 37.59283100287284 20.89308490982131 21.217024878112746 7 78.59254491053655 8.639392530605921 7.334096246230137 5.4339663126274 8 81.44184577238971 6.656117011765547 5.349926688838822 6.552110527005925 9 74.42692128884597 11.046740335443264 9.666642825638641 4.859695550072119 10 39.87650347482983 30.84403199465961 13.076207846082324 16.203256684428233 11 31.186448759670515 27.974466258985085 24.49248411591508 16.346600865429316 12 30.183337505513236 25.734899688874584 27.88983060949588 16.191932196116294 13 24.046060866144547 34.0426039170809 23.714968589445576 18.19636662732897 14 16.98941458355684 35.257900320661825 29.944331199561326 17.808353896220005 15 15.905541846964441 30.85893263717531 33.350916091501865 19.88460942435838 16 17.37742731466581 28.06476415263026 33.45462456341117 21.103183969292754 17 17.74785728760624 27.973870233284458 28.289465841767097 25.988806637342204 18 21.33742206963964 26.367282957241116 28.673008380121352 23.62228659299789 19 21.974275530760888 31.940719283815515 26.16731633468035 19.917688850743247 20 25.079271418183552 30.024496656295817 25.138873988246374 19.757357937274257 21 21.582686645448153 31.498766226799702 25.236324190299086 21.682222937453062 22 20.875502151652782 29.607576678706387 26.30499827152547 23.21192289811537 23 20.282158566677396 31.2833029360226 23.998080797243976 24.436457700056028 24 18.527160891177626 30.586846904838538 28.221816924745795 22.66417527923804 25 19.038848955166944 28.776418839180344 27.949135166708388 24.23559703894432 26 20.463946405369 31.75297118811763 24.797947287487037 22.98513511902633 27 17.18163287200944 30.748071856858466 27.434168961365614 24.636126309766475 28 19.50136489885444 28.791021468845734 31.119693881200156 20.58791975109967 29 18.854080987972203 29.108703167280574 27.64814218789114 24.389073656856084 30 20.582853532644325 28.824994933781547 29.011550978078176 21.580600555495952 31 25.636853461121245 28.656915686204385 22.544076100561455 23.16215475211291 32 22.709175219635473 26.917414678920952 25.964071570766134 24.409338530677445 33 22.873678313008856 28.744829477047052 26.08566081369429 22.295831396249806 34 19.43401399468345 25.83324392947824 26.793441333190287 27.939300742648022 35 18.871365733290418 27.091752196354708 30.951912646473318 23.084969423881557 36 22.943115307132047 26.16374018047658 28.462313294949276 22.430831217442098 37 19.82828499564901 29.0628091883322 26.77317645936893 24.33572935664986 38 23.035201277879104 28.821418779577773 26.06837606837607 22.075003874167052 39 20.172787850612117 26.133342869744542 27.456817937989484 26.23705134165385 40 22.37361275018179 26.794037358890915 24.898675630893205 25.933674260034095 41 19.000405297476426 22.355433966312628 31.161415680244133 27.482745055966813 42 23.543611200514967 24.927582877373673 27.59956609328994 23.92923982882142 43 20.965800045297954 25.087019752291717 28.229267246003648 25.71791295640668 44 21.520401959732503 25.329900225297713 26.435527899963045 26.714169915006735 45 23.110300516158258 27.123341558488 26.657547473447057 23.108810451906685 46 20.149840861137932 25.83503200658012 30.339794251928144 23.6753328803538 47 20.567356864427992 26.793441333190287 26.904898139207763 25.734303663173957 48 21.3407002109931 22.453778206916283 32.79661218991763 23.40890939217299 49 21.38808425419304 21.09752172513679 32.0712489122531 25.443145108417077 50 19.41076899235895 25.02056288667167 27.625493211267273 27.94317490970211 51 19.278153273969174 24.859337934651744 30.85058827736652 25.011920514012566 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2494.0 1 2019.0 2 1544.0 3 1069.0 4 594.0 5 591.5 6 589.0 7 599.5 8 610.0 9 667.0 10 724.0 11 733.0 12 742.0 13 862.0 14 982.0 15 996.0 16 1010.0 17 1074.5 18 1139.0 19 1207.0 20 1275.0 21 1301.0 22 1327.0 23 1548.0 24 1769.0 25 1611.5 26 1916.0 27 2378.0 28 2614.0 29 2850.0 30 4087.5 31 5325.0 32 5815.5 33 6306.0 34 6979.0 35 7652.0 36 8737.5 37 9823.0 38 10289.5 39 10756.0 40 12594.0 41 14432.0 42 19428.5 43 24425.0 44 29018.5 45 33612.0 46 33796.5 47 33981.0 48 34883.0 49 35785.0 50 33453.5 51 31122.0 52 28805.0 53 26488.0 54 22542.5 55 18597.0 56 16140.5 57 13684.0 58 11940.0 59 10196.0 60 9505.0 61 8814.0 62 7778.0 63 6742.0 64 6133.5 65 5525.0 66 4541.5 67 3558.0 68 3039.0 69 2520.0 70 2012.5 71 1505.0 72 1383.0 73 1261.0 74 1020.0 75 634.0 76 489.0 77 386.0 78 283.0 79 231.0 80 179.0 81 159.0 82 139.0 83 89.0 84 39.0 85 32.5 86 26.0 87 16.5 88 7.0 89 7.0 90 7.0 91 6.0 92 5.0 93 7.0 94 9.0 95 6.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 335556.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.767316900389634 #Duplication Level Percentage of deduplicated Percentage of total 1 76.94565172107953 23.674112506094648 2 9.827590219479317 6.047371652997797 3 3.207691606242627 2.9607619250396024 4 1.463202711166071 1.8007528601582317 5 0.9107264371031878 1.4010304449958273 6 0.6430878210460741 1.1871652070943373 7 0.49130196035317164 1.0581230175578085 8 0.37946075838370075 0.9339991523562803 9 0.3205444722631495 0.8876064022909629 >10 4.916013800999637 37.19159908025073 >50 0.8338150566102317 16.053417072947262 >100 0.05292478802436201 3.029966874766146 >500 0.0019971618122400754 0.4172272374703333 >1k 0.005991485436720227 3.356866565980016 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT 2943 0.8770518184744126 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2129 0.6344693583187306 No Hit AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 1592 0.47443645770005605 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC 1575 0.46937023924471627 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT 1383 0.412151771984408 No Hit AAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 1304 0.38860875680959367 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT 823 0.24526457580850886 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 535 0.15943687491804648 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 482 0.14364219385139887 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT 467 0.1391720010966873 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 429 0.1278475127847513 No Hit GAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT 366 0.10907270321496264 No Hit CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC 355 0.10579456186150747 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1446673580564795 0.0 2 0.0 0.0 0.0 1.4733755319529378 0.0 3 0.0 0.0 0.0 1.9180107046215833 0.0 4 0.0 0.0 0.0 4.381980951018608 0.0 5 0.0 0.0 0.0 4.757775155264695 0.0 6 0.0 0.0 0.0 6.480587442930539 0.0 7 0.0 0.0 0.0 7.805850588277367 0.0 8 0.0 0.0 0.0 8.627174003743042 0.0 9 0.0 0.0 0.0 10.15210575880032 0.0 10 0.0 0.0 0.0 11.96610997866228 0.0 11 0.0 0.0 0.0 14.199716291766501 0.0 12 0.0 0.0 0.0 15.127728307644626 0.0 13 0.0 0.0 0.0 15.547032388036572 0.0 14 0.0 0.0 0.0 15.945177556056217 0.0 15 0.0 0.0 0.0 16.25838906173634 0.0 16 0.0 0.0 0.0 16.8764677132878 0.0 17 0.0 0.0 0.0 17.609579325060498 0.0 18 0.0 0.0 0.0 18.601068078055526 0.0 19 0.0 0.0 0.0 19.045405237873858 0.0 20 0.0 0.0 0.0 19.48765630773999 0.0 21 0.0 0.0 0.0 19.968351035296642 0.0 22 0.0 0.0 0.0 20.438317300241987 0.0 23 0.0 0.0 0.0 20.931826580362145 0.0 24 0.0 0.0 0.0 21.294806232044724 0.0 25 0.0 0.0 0.0 21.582686645448153 0.0 26 0.0 0.0 0.0 21.875633277306918 0.0 27 0.0 0.0 0.0 22.16321567786003 0.0 28 0.0 0.0 0.0 22.431725255993037 0.0 29 0.0 0.0 0.0 22.728546054905888 0.0 30 0.0 0.0 0.0 23.187783857239925 0.0 31 0.0 0.0 0.0 23.51559799258544 0.0 32 0.0 0.0 0.0 23.80318039313855 0.0 33 0.0 0.0 0.0 24.10774952615957 0.0 34 0.0 0.0 0.0 24.38370942555043 0.0 35 0.0 0.0 0.0 24.747583115783954 0.0 36 0.0 0.0 0.0 25.02831122077984 0.0 37 0.0 0.0 0.0 25.31797971128515 0.0 38 0.0 0.0 0.0 25.639833589624384 0.0 39 0.0 0.0 0.0 25.966753686418958 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCCG 35 1.208482E-7 45.000004 1 CGACACG 35 1.208482E-7 45.000004 1 CCGCATG 35 1.208482E-7 45.000004 1 ACGCGCA 35 1.208482E-7 45.000004 15 ATTTACG 20 7.0261396E-4 45.0 25 AACGTAG 25 3.8848826E-5 45.0 1 CGGGTCA 25 3.8848826E-5 45.0 6 TCGTTCA 20 7.0261396E-4 45.0 16 ACCGGCT 20 7.0261396E-4 45.0 45 TCCGCTG 25 3.8848826E-5 45.0 41 CTCGTTC 20 7.0261396E-4 45.0 15 ATAGGCG 25 3.8848826E-5 45.0 1 ACGTTCA 20 7.0261396E-4 45.0 19 TCCGAGC 20 7.0261396E-4 45.0 17 TAGACCG 20 7.0261396E-4 45.0 35 CGCATCA 20 7.0261396E-4 45.0 20 AGCTTAG 20 7.0261396E-4 45.0 1 GACCGAT 40 6.7902874E-9 45.0 9 TAAACGG 45 3.8380676E-10 45.0 2 ATAGACG 25 3.8848826E-5 45.0 1 >>END_MODULE