SRR3548848_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548848_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366419
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT	2957	0.806999637027556	TruSeq Adapter, Index 15 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCC	2273	0.6203280943400861	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	1935	0.528083969444816	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1911	0.5215340907540276	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGT	1833	0.5002469850089651	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	902	0.24616627412879794	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	609	0.16620317177875601	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	461	0.1258122531855608	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	445	0.12144566739170186	No Hit

$Adapter graph$

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	20	7.0269883E-4	45.000004	6
CGAACTT	20	7.0269883E-4	45.000004	21
TACCCGG	35	1.2089004E-7	45.000004	2
GCAAGCG	20	7.0269883E-4	45.000004	1
CCCTCGG	20	7.0269883E-4	45.000004	2
GTCGATA	20	7.0269883E-4	45.000004	37
CGTGCGC	20	7.0269883E-4	45.000004	17
CGCATAG	30	2.1614396E-6	45.000004	1
GGATCGA	20	7.0269883E-4	45.000004	8
TCGATAT	20	7.0269883E-4	45.000004	38
CACCTAG	20	7.0269883E-4	45.000004	1
ACGATTG	20	7.0269883E-4	45.000004	1
AGTGCGG	40	6.7939254E-9	45.000004	2
GTAGCGG	40	6.7939254E-9	45.000004	2
GCCGAGT	20	7.0269883E-4	45.000004	20
AAGCCCG	20	7.0269883E-4	45.000004	1
TGCGCGA	20	7.0269883E-4	45.000004	19
CCATCGA	20	7.0269883E-4	45.000004	10
CTCGGTA	20	7.0269883E-4	45.000004	22
CATAGCG	30	2.1614396E-6	45.000004	1