SRR3548847_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548847_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373536
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT	2840	0.7603015505868242	TruSeq Adapter, Index 15 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCC	2324	0.6221622547759788	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1956	0.5236443073759959	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	1786	0.4781332990662212	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGT	1723	0.4612674548102459	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	832	0.22273622890430908	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	543	0.1453675147776921	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	511	0.136800736742911	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	453	0.12127345155487021	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCT	381	0.10199820097661269	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAG	20	7.027164E-4	45.000004	1
CAGCGCG	20	7.027164E-4	45.000004	1
TCTTGCG	30	2.1615524E-6	45.000004	1
ACCGGTA	20	7.027164E-4	45.000004	27
GTTCTCG	20	7.027164E-4	45.000004	44
GGTCGGG	30	2.1615524E-6	45.000004	3
ACCGCGC	20	7.027164E-4	45.000004	10
CGGCATT	20	7.027164E-4	45.000004	26
GGGTACG	35	1.2089913E-7	45.000004	7
ATTACCG	20	7.027164E-4	45.000004	1
TAAACGG	40	6.7939254E-9	45.000004	2
AAGGTGC	20	7.027164E-4	45.000004	42
AGGGTAC	75	0.0	45.000004	6
CGCTGTT	20	7.027164E-4	45.000004	30
CGATTAA	20	7.027164E-4	45.000004	24
TCTAGCG	20	7.027164E-4	45.000004	1
GTCAGAC	30	2.1615524E-6	45.000004	20
GTAGCGG	40	6.7939254E-9	45.000004	2
GAGACGA	20	7.027164E-4	45.000004	8
TCCAGCG	20	7.027164E-4	45.000004	1