##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548845_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 323121 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.95662925034275 31.0 31.0 33.0 28.0 34.0 2 31.156563640246222 31.0 31.0 34.0 28.0 34.0 3 31.15875786470084 31.0 31.0 34.0 28.0 34.0 4 35.164068568740504 37.0 35.0 37.0 32.0 37.0 5 34.769906629405085 35.0 35.0 37.0 32.0 37.0 6 34.808857981994365 35.0 35.0 37.0 32.0 37.0 7 34.682923734452416 35.0 35.0 37.0 32.0 37.0 8 35.11210042058548 36.0 35.0 37.0 32.0 37.0 9 35.60198810971741 39.0 35.0 39.0 31.0 39.0 10 35.37602631831419 37.0 35.0 39.0 30.0 39.0 11 35.82893405256854 37.0 35.0 39.0 30.0 39.0 12 35.40205990944569 37.0 35.0 39.0 30.0 39.0 13 35.06288975337412 37.0 34.0 39.0 29.0 39.0 14 35.94924501966756 38.0 34.0 40.0 30.0 41.0 15 36.197142865985185 38.0 34.0 40.0 31.0 41.0 16 36.18022969723416 38.0 34.0 40.0 31.0 41.0 17 36.168512724335464 38.0 35.0 40.0 31.0 41.0 18 35.92097387665921 37.0 34.0 40.0 30.0 41.0 19 35.88669879085544 37.0 34.0 40.0 30.0 41.0 20 35.879781877377205 37.0 34.0 40.0 30.0 41.0 21 35.944085961605715 37.0 34.0 40.0 30.0 41.0 22 35.943033724208576 37.0 34.0 40.0 30.0 41.0 23 35.83859916254283 37.0 34.0 40.0 30.0 41.0 24 35.444003948985056 37.0 34.0 40.0 29.0 41.0 25 35.50838230879454 37.0 34.0 40.0 29.0 41.0 26 35.3833734111989 37.0 34.0 40.0 29.0 41.0 27 35.282055329118194 37.0 34.0 40.0 28.0 41.0 28 35.127599258482114 37.0 34.0 40.0 27.0 41.0 29 34.99586223117656 37.0 34.0 40.0 27.0 41.0 30 35.04099702588194 37.0 34.0 40.0 27.0 41.0 31 34.67731902290473 36.0 33.0 40.0 25.0 41.0 32 34.55607651622767 36.0 33.0 40.0 25.0 41.0 33 34.55395656735403 36.0 33.0 40.0 25.0 41.0 34 34.5157232120475 36.0 33.0 40.0 25.0 41.0 35 34.36262576558008 36.0 33.0 40.0 25.0 41.0 36 34.18403941557497 36.0 33.0 40.0 24.0 41.0 37 34.00253155938488 36.0 33.0 40.0 23.0 41.0 38 33.84809096282817 36.0 33.0 39.0 23.0 41.0 39 33.71850173773911 36.0 33.0 39.0 23.0 41.0 40 33.66790459301624 36.0 33.0 39.0 23.0 41.0 41 33.805818872806164 36.0 33.0 39.0 23.0 41.0 42 33.76597002361345 36.0 33.0 39.0 23.0 41.0 43 33.7169605194339 36.0 33.0 39.0 23.0 40.0 44 33.67967417778479 36.0 33.0 39.0 23.0 40.0 45 33.40832381677452 35.0 32.0 39.0 22.0 40.0 46 33.15782941993866 35.0 32.0 39.0 21.0 40.0 47 33.122520665633 35.0 32.0 39.0 20.0 40.0 48 33.03410796574658 35.0 32.0 39.0 20.0 40.0 49 32.95029106743294 35.0 31.0 39.0 20.0 40.0 50 32.829243534155935 35.0 31.0 39.0 20.0 40.0 51 30.792814456503912 34.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 7.0 11 12.0 12 9.0 13 11.0 14 10.0 15 32.0 16 82.0 17 170.0 18 393.0 19 751.0 20 1255.0 21 1839.0 22 2426.0 23 3177.0 24 3679.0 25 4013.0 26 4544.0 27 5617.0 28 6796.0 29 8590.0 30 11058.0 31 13854.0 32 18026.0 33 23811.0 34 37154.0 35 40217.0 36 32397.0 37 38236.0 38 40814.0 39 24135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.08833532948957 40.06177252484363 19.015786655772914 23.83410548989388 2 17.73484236555346 41.283296350283635 18.667310388368445 22.314550895794454 3 18.59055895469499 31.42568882864314 26.847837187926505 23.135915028735365 4 23.171195929698165 32.59831456327506 18.374231325107313 25.85625818191947 5 15.126222065418219 41.495600719235206 18.50359462863757 24.874582586709003 6 19.41161360604851 35.30689741613823 24.507227942473563 20.774261035339702 7 70.97960206857493 14.521495043652378 8.214260292583893 6.284642595188799 8 73.49135463185618 8.201571547500782 5.852296817600837 12.454777003042205 9 68.97508982703074 13.531772927169698 11.399135308444825 6.094001937354737 10 38.73873873873874 33.445675149556976 12.800158454572747 15.01542765713154 11 32.05362696946345 23.00438535409336 27.329390537909948 17.612597138533243 12 30.314959411489813 23.600446891412197 31.468706769290762 14.615886927807232 13 21.34834937995364 38.4239959643601 22.33807149643632 17.88958315924994 14 12.584140306572461 38.898431237833506 33.214492403774436 15.302936051819596 15 11.658480878680123 31.05214455265984 35.92121836711325 21.36815620154679 16 12.970992290813657 26.799558060293204 38.63196759108817 21.59748205780497 17 12.833582466011183 27.57728528941171 28.69080004085157 30.898332203725538 18 16.318654621643287 28.941480126639867 29.846713769764264 24.89315148195258 19 19.13586551168138 33.47940864258281 28.8696803983647 18.515045447371108 20 22.056133770321335 33.20520795615265 24.219719547785505 20.51893872574051 21 16.230761850823686 33.68459493502434 25.893705453994016 24.19093776015796 22 16.210026584468356 32.88953673701183 26.03173424197127 24.86870243654854 23 19.472890960352313 32.57912670485669 20.308491246313302 27.63949108847769 24 14.617743817331588 36.12826154907914 28.569792740180922 20.684201893408353 25 15.249705218788009 28.729485239275686 29.157188793052757 26.863620748883545 26 20.044503452267108 37.03751845283965 21.04165312684722 21.876324968046028 27 13.423454371582164 33.49766805623899 26.76860990155391 26.31026767062494 28 17.00446581930608 29.50814091315637 28.91765004441061 24.56974322312694 29 18.731373076958786 30.813534248779867 29.088483880651523 21.366608793609824 30 18.744061822041896 29.553634706503136 22.52097511458556 29.181328356869408 31 25.475286347838733 34.303558109810254 18.346996945416734 21.874158596934276 32 22.86233330547999 33.167760684078104 17.880917674802937 26.08898833563897 33 22.501787256167194 28.6852293722785 20.284970645671436 28.528012725882874 34 18.437365568935476 29.590153533815506 24.540342472324607 27.432138424924407 35 16.479894528675015 30.805487727507654 22.9366088864543 29.77800885736303 36 24.672800591728794 27.108111202923986 26.9533704092275 21.26571779611972 37 17.136923938710265 33.89813723032548 22.31857415643056 26.64636467453369 38 19.322173427291943 34.37473887491064 22.973437195354062 23.329650502443357 39 16.633706877609317 31.39969237530213 28.807474599298715 23.159126147789838 40 20.70617508611325 30.34095586483082 21.66433008068185 27.288538968374077 41 16.867365476091003 22.83602737055159 33.80684016204456 26.48976699131285 42 23.66667595111429 28.225649214999954 22.65064789970321 25.457026934182554 43 20.481800935253357 24.974235657849537 27.61844634053497 26.925517066362136 44 19.768136394725197 25.647977073604007 26.255489429656382 28.328397102014414 45 23.9650162013611 31.681011138242333 22.042207098888653 22.31176556150792 46 18.35411502192677 27.54107594368673 33.23553715171716 20.86927188266934 47 21.182776730698407 27.19383760263183 23.683078475246116 27.940307191423646 48 20.56505148226206 21.493496244440937 35.3301085351927 22.6113437381043 49 21.51082721333494 21.226723116108207 30.53623874647578 26.726210924081073 50 19.122248321836093 24.380649973229843 25.03829834643988 31.458803358494187 51 16.990229666286005 25.438458038938972 31.917764552597944 25.65354774217708 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2954.0 1 2423.5 2 1893.0 3 1375.5 4 858.0 5 867.0 6 876.0 7 972.0 8 1068.0 9 1173.5 10 1279.0 11 1405.0 12 1531.0 13 1543.5 14 1556.0 15 1610.0 16 1664.0 17 1633.5 18 1603.0 19 1584.0 20 1565.0 21 1498.0 22 1431.0 23 1477.0 24 1523.0 25 1650.0 26 1947.0 27 2117.0 28 2358.0 29 2599.0 30 2866.5 31 3134.0 32 3876.5 33 4619.0 34 5355.5 35 6092.0 36 6571.0 37 7050.0 38 8066.5 39 9083.0 40 11025.5 41 12968.0 42 18205.5 43 23443.0 44 34465.5 45 45488.0 46 44901.0 47 44314.0 48 41062.5 49 37811.0 50 34016.0 51 30221.0 52 26293.5 53 22366.0 54 19165.0 55 15964.0 56 13444.0 57 10924.0 58 9098.5 59 7273.0 60 6237.0 61 5201.0 62 4398.0 63 3595.0 64 3123.5 65 2652.0 66 2151.0 67 1650.0 68 1359.0 69 1068.0 70 772.0 71 476.0 72 433.5 73 391.0 74 374.0 75 346.5 76 336.0 77 261.0 78 186.0 79 117.5 80 49.0 81 53.0 82 57.0 83 41.5 84 26.0 85 23.0 86 20.0 87 12.5 88 5.0 89 4.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 323121.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.002020626669456 #Duplication Level Percentage of deduplicated Percentage of total 1 76.98770657353487 25.407498803397733 2 10.523685235543649 6.946057544239766 3 3.6119390861365024 3.576038646688514 4 1.7379517307540386 2.294236754660026 5 1.053647130373923 1.7386242164915644 6 0.653143492631042 1.2933033009590746 7 0.49879467085280316 1.1522862411169907 8 0.39624433455031605 1.0461490961624351 9 0.3175922309140337 0.9433066819945417 >10 3.433777785441409 25.764976163446146 >50 0.6959149464612354 15.318294678736425 >100 0.07466898567180637 4.060389636648465 >500 0.006969105329368595 1.5205925909054132 >1k 0.004977932378120426 3.0888269116468865 >5k 0.002986759426872255 5.849418732906023 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCC 6139 1.8999074650053696 No Hit AATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT 5849 1.8101578046614115 TruSeq Adapter, Index 13 (95% over 22bp) AATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGT 5815 1.799635430690051 No Hit CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT 3435 1.063069252694811 TruSeq Adapter, Index 13 (96% over 25bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2496 0.7724660421328233 No Hit AATGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTT 1292 0.39985021091170186 No Hit AATGATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT 1108 0.34290559883139754 No Hit AAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT 1070 0.33114529851046515 No Hit AACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTG 985 0.3048393635820637 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTT 827 0.2559412727739763 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 624 0.19311651053320583 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTAT 589 0.18228465497445231 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 588 0.18197517338705932 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT 512 0.1584545727451945 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 503 0.1556692384586579 No Hit AATGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC 462 0.1429804933755466 TruSeq Adapter, Index 13 (95% over 21bp) AATGATACGGCTGTCTCTTATACACATCTGACGCCGCCACTATCGTATGCC 381 0.11791248479671701 No Hit GAAAAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT 353 0.1092470003497142 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.416497225497569 0.0 2 0.0 0.0 0.0 1.7312399998762074 0.0 3 0.0 0.0 0.0 2.4464519483413336 0.0 4 0.0 0.0 0.0 6.560081207968532 0.0 5 0.0 0.0 0.0 7.076296495739986 0.0 6 0.0 0.0 0.0 9.350057718316048 0.0 7 0.0 0.0 0.0 11.27936593412375 0.0 8 0.0 0.0 0.0 12.430018476050767 0.0 9 0.0 0.0 0.0 15.899616552313221 0.0 10 0.0 0.0 0.0 18.082699669783146 0.0 11 0.0 0.0 0.0 22.39254025581748 0.0 12 0.0 0.0 0.0 23.57290303013422 0.0 13 0.0 0.0 0.0 24.180724867773993 0.0 14 0.0 0.0 0.0 24.856323173052818 0.0 15 0.0 0.0 0.0 25.236985525546157 0.0 16 0.0 0.0 0.0 25.920630352097202 0.0 17 0.0 0.0 0.0 26.755611674883404 0.0 18 0.0 0.0 0.0 27.99848972985352 0.0 19 0.0 0.0 0.0 28.46487848205471 0.0 20 0.0012379263495718323 0.0 0.0 28.958501613946478 0.0 21 0.0012379263495718323 0.0 0.0 29.485239275689292 0.0 22 0.0012379263495718323 0.0 0.0 30.030545832675685 0.0 23 0.0012379263495718323 0.0 0.0 30.58761268998301 0.0 24 0.0012379263495718323 0.0 0.0 30.939493254848802 0.0 25 0.0012379263495718323 0.0 0.0 31.251760176528297 0.0 26 0.0012379263495718323 0.0 0.0 31.548553018838145 0.0 27 0.0012379263495718323 0.0 0.0 31.893624988781294 0.0 28 0.0012379263495718323 0.0 0.0 32.21641428443215 0.0 29 0.0012379263495718323 0.0 0.0 32.56736640453576 0.0 30 0.0012379263495718323 0.0 0.0 33.08079635802068 0.0 31 0.0012379263495718323 0.0 0.0 33.43670018352258 0.0 32 0.0012379263495718323 0.0 0.0 33.71925687281235 0.0 33 0.0012379263495718323 0.0 0.0 34.0247151995692 0.0 34 0.0012379263495718323 0.0 0.0 34.310057223145506 0.0 35 0.0012379263495718323 0.0 0.0 34.67400756991963 0.0 36 0.0012379263495718323 0.0 0.0 34.97884693350169 0.0 37 0.0012379263495718323 0.0 0.0 35.27316392311239 0.0 38 0.0012379263495718323 0.0 0.0 35.57367054447096 0.0 39 0.0012379263495718323 0.0 0.0 35.87850990805302 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTGG 30 2.160641E-6 45.000004 6 CAGAACC 20 7.0257497E-4 45.000004 32 TGATAGT 20 7.0257497E-4 45.000004 33 AGTCCGC 20 7.0257497E-4 45.000004 38 GGAGCGT 30 2.160641E-6 45.000004 8 GGAGCAT 20 7.0257497E-4 45.000004 8 ATCTACG 20 7.0257497E-4 45.000004 1 GTTTCAA 20 7.0257497E-4 45.000004 24 ACCATAC 20 7.0257497E-4 45.000004 43 GAGTATA 20 7.0257497E-4 45.000004 27 GATCCAA 20 7.0257497E-4 45.000004 9 TAAGTCC 20 7.0257497E-4 45.000004 36 TACGGGT 20 7.0257497E-4 45.000004 4 TAACGCC 20 7.0257497E-4 45.000004 12 GCGTTGG 30 2.160641E-6 45.000004 2 ACGGGTC 40 6.7884685E-9 45.000004 5 TATGAGT 20 7.0257497E-4 45.000004 20 TAGCACG 20 7.0257497E-4 45.000004 1 TACGCGG 40 6.7884685E-9 45.000004 2 TCGGACC 20 7.0257497E-4 45.000004 12 >>END_MODULE