SRR3548843_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548843_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	640239
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	4566	0.713171175139284	TruSeq Adapter, Index 21 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3215	0.5021562260343403	No Hit
AAACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCT	1721	0.26880586780874016	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTT	1438	0.22460362458394442	No Hit
AATCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCT	1148	0.17930803965394174	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCC	848	0.1324505380022148	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGT	843	0.13166957964135267	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCT	829	0.12948289623093875	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	781	0.12198569596666245	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	648	0.10121220356773017	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAG	30	2.1639898E-6	45.000004	25
GCGAAGA	30	2.1639898E-6	45.000004	16
TAACGCA	30	2.1639898E-6	45.000004	28
CGCTGCG	30	2.1639898E-6	45.000004	1
TCGGCAT	30	2.1639898E-6	45.000004	32
CCATCCG	30	2.1639898E-6	45.000004	1
TCATCCG	30	2.1639898E-6	45.000004	1
AATTACG	30	2.1639898E-6	45.000004	1
CGCCAGT	30	2.1639898E-6	45.000004	26
TATTTCG	25	3.8888626E-5	45.0	20
CTTAACG	25	3.8888626E-5	45.0	1
CAGGTCG	20	7.0309424E-4	45.0	8
AACGTAG	25	3.8888626E-5	45.0	1
TCGTTTA	35	1.2107921E-7	45.0	38
TCGCACG	35	1.2107921E-7	45.0	1
TCACCGC	20	7.0309424E-4	45.0	24
ATCTACG	20	7.0309424E-4	45.0	10
ATCTACC	70	0.0	45.0	15
GAATGCG	35	1.2107921E-7	45.0	1
CGAAACG	25	3.8888626E-5	45.0	1