SRR3548841_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548841_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	646928
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	19808	3.0618554151312045	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGT	17913	2.7689325550911383	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	17092	2.6420250785249673	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	7124	1.101204461702075	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	3699	0.5717792397299235	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3425	0.5294252219721515	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT	3098	0.47887863873568615	No Hit
AACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	2508	0.3876783815200455	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTAT	2200	0.34006875571933814	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	1661	0.2567519105681003	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	1218	0.1882744293027972	No Hit
AATGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC	940	0.1453021047164445	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	802	0.12397051913041326	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTGCCATC	790	0.12211559864467143	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	776	0.11995152474463927	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAC	20	7.030998E-4	45.0	14
TCGTTAG	25	3.888908E-5	45.0	23
ACCGGAT	25	3.888908E-5	45.0	37
CGAACAG	20	7.030998E-4	45.0	1
CATATAG	25	3.888908E-5	45.0	1
CGTATAG	20	7.030998E-4	45.0	1
GTCGAGT	25	3.888908E-5	45.0	17
GTCGAAC	20	7.030998E-4	45.0	26
CCGATTC	25	3.888908E-5	45.0	18
CGTGATA	20	7.030998E-4	45.0	30
TAGAACG	25	3.888908E-5	45.0	1
TAGCGAG	20	7.030998E-4	45.0	1
GATCCGA	20	7.030998E-4	45.0	38
ACCGATA	20	7.030998E-4	45.0	11
ATTCGTA	25	3.888908E-5	45.0	31
GTGATAA	20	7.030998E-4	45.0	17
TTCCGCA	20	7.030998E-4	45.0	15
CGATTCG	20	7.030998E-4	45.0	1
GCTTGTA	20	7.030998E-4	45.0	27
TGTTGCG	20	7.030998E-4	45.0	13