SRR3548837_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548837_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375233
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCC	3862	1.0292271735161886	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGT	3532	0.9412818168977676	No Hit
CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT	3258	0.8682605207964118	No Hit
AATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT	3213	0.8562679721666272	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3102	0.8266863522131582	No Hit
AAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT	1018	0.27129810011379596	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT	730	0.19454578888317392	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT	727	0.1937462856411883	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	603	0.1607001516391149	No Hit
CTTCGAGGGAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTC	601	0.16016714947779115	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT	549	0.14630909328337327	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	496	0.13218453600829352	No Hit
AACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTG	496	0.13218453600829352	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	482	0.12845352087902717	No Hit
AATGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC	473	0.12605501115307022	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTAT	408	0.1087324409100479	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	45	3.8380676E-10	45.000004	2
CTAACGG	45	3.8380676E-10	45.000004	2
TCTACAG	45	3.8380676E-10	45.000004	1
CGGTAGT	45	3.8380676E-10	45.000004	12
TCGACAA	45	3.8380676E-10	45.000004	19
ATCGACA	45	3.8380676E-10	45.000004	18
TGCAACG	45	3.8380676E-10	45.000004	1
TAATCAC	25	3.885766E-5	45.0	38
AACGTTG	20	7.027207E-4	45.0	1
AAACTTG	25	3.885766E-5	45.0	44
TTTAGCG	20	7.027207E-4	45.0	41
ATCCTAC	20	7.027207E-4	45.0	28
CGGGTAT	75	0.0	45.0	6
CTAGAAC	25	3.885766E-5	45.0	13
TCGTTTG	20	7.027207E-4	45.0	41
TCGTTTA	20	7.027207E-4	45.0	10
AGCCGAA	20	7.027207E-4	45.0	25
GGTACGT	25	3.885766E-5	45.0	8
GGTACCT	25	3.885766E-5	45.0	8
AAATCGA	25	3.885766E-5	45.0	28