SRR3548835_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548835_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	461374
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCC	4408	0.9554071100668872	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT	3976	0.8617737453779364	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGT	3951	0.8563551478843628	No Hit
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGCT	3125	0.6773246866966929	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2591	0.5615834442339621	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT	1054	0.22844807032906062	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT	862	0.18683324157841577	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	778	0.16862675400000868	No Hit
AACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTG	682	0.14781933962468627	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT	608	0.1317802910437086	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	592	0.1283123886478215	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	573	0.12419425455270561	No Hit
GTATTGGGATAAAGCAAATATGAGTAAGTAAGTAAGTAAGTAAGTAAGTAA	524	0.11357380346530146	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	487	0.10555427917481262	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTAT	471	0.10208637677892557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGAA	30	2.1626656E-6	45.000004	25
CAGCACG	60	0.0	45.000004	1
ATTACCG	30	2.1626656E-6	45.000004	1
ATTAACG	30	2.1626656E-6	45.000004	1
ATAGACG	55	1.8189894E-12	45.000004	1
ATCCCCG	30	2.1626656E-6	45.000004	38
CGCACCG	30	2.1626656E-6	45.000004	1
TACGTGC	30	2.1626656E-6	45.000004	27
CTTCGTC	20	7.0288917E-4	45.0	38
CTTCGCA	20	7.0288917E-4	45.0	10
CCCCTAC	40	6.7993824E-9	45.0	31
AGATCTA	20	7.0288917E-4	45.0	35
AGATCGA	20	7.0288917E-4	45.0	45
GTCGACA	25	3.8871636E-5	45.0	14
GATCGCG	25	3.8871636E-5	45.0	1
CCTAGCG	20	7.0288917E-4	45.0	1
TCTTCGT	20	7.0288917E-4	45.0	37
CCGGCTA	20	7.0288917E-4	45.0	2
TTTCGCG	25	3.8871636E-5	45.0	1
CGTTGCG	25	3.8871636E-5	45.0	1