SRR3548829_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548829_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405506
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC	5821	1.4354904736304765	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGT	4974	1.2266156357735767	No Hit
AATCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT	4751	1.171622614708537	No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	3311	0.8165107298042447	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2364	0.5829753443845467	No Hit
AAACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT	1043	0.257209511079984	No Hit
AATGACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTT	1026	0.2530172179943083	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCT	891	0.21972547878453094	No Hit
AACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG	765	0.18865318885540533	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	683	0.1684315398539109	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTT	664	0.16374603581697927	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	589	0.1452506251448807	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCATACGCACTCGTAT	520	0.12823484732655002	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	507	0.1250289761433863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.0278795E-4	45.000004	41
ACGCGAG	20	7.0278795E-4	45.000004	1
TATCACG	20	7.0278795E-4	45.000004	1
TTAGGCG	20	7.0278795E-4	45.000004	1
TCGTTAC	20	7.0278795E-4	45.000004	36
TACCCCG	20	7.0278795E-4	45.000004	1
CGAACAG	20	7.0278795E-4	45.000004	1
ACGCCCA	20	7.0278795E-4	45.000004	19
CACGGTA	20	7.0278795E-4	45.000004	42
TAGACGC	20	7.0278795E-4	45.000004	37
GAGTATC	20	7.0278795E-4	45.000004	13
CATGACG	40	6.7957444E-9	45.000004	1
TATGGAT	20	7.0278795E-4	45.000004	4
ATTACGG	80	0.0	45.000004	2
GCGCCTT	20	7.0278795E-4	45.000004	16
AGGGTAC	65	0.0	45.000004	6
CGATTCG	20	7.0278795E-4	45.000004	1
CCGCTTA	20	7.0278795E-4	45.000004	15
TAACGGT	20	7.0278795E-4	45.000004	31
TCAGGTA	20	7.0278795E-4	45.000004	10