SRR3548826_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548826_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	404254
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	4498	1.1126667887021526	No Hit
AATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	3428	0.8479817144666472	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGT	3320	0.8212658378148392	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	3176	0.7856446689457619	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2002	0.49523319497147833	No Hit
AAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	954	0.23599024375763755	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	926	0.229063905366428	No Hit
AATGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTT	762	0.18849535193220104	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCT	653	0.16153210605213553	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTT	633	0.1565847214869859	No Hit
AACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG	470	0.1162635372810164	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	450	0.11131615271586676	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	439	0.10859509120503445	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTAT	421	0.10414244509639979	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	419	0.10364770663988483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATCGG	35	1.2093187E-7	45.000004	2
TCATAGT	35	1.2093187E-7	45.000004	28
ACGACAG	35	1.2093187E-7	45.000004	1
GTCATCG	25	3.8863032E-5	45.0	1
AATCCGG	75	0.0	45.0	2
TACCCCG	25	3.8863032E-5	45.0	1
CGAACGG	40	6.7957444E-9	45.0	2
AATCACG	20	7.0278544E-4	45.0	27
CGAAATA	20	7.0278544E-4	45.0	16
CGTGCTC	20	7.0278544E-4	45.0	45
GAGTCAT	25	3.8863032E-5	45.0	17
TGAACTT	25	3.8863032E-5	45.0	16
CCTACGG	20	7.0278544E-4	45.0	2
ATATGCG	25	3.8863032E-5	45.0	1
TAACGCT	20	7.0278544E-4	45.0	16
TAACGAC	20	7.0278544E-4	45.0	29
ATCCGAA	20	7.0278544E-4	45.0	22
GTTACGG	40	6.7957444E-9	45.0	2
CCGTATA	20	7.0278544E-4	45.0	28
ATATCGC	25	3.8863032E-5	45.0	38