SRR3548820_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548820_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	459939
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT	4334	0.9422988700675525	TruSeq Adapter, Index 23 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3689	0.8020628822517769	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC	3023	0.657261071576883	No Hit
AATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	2841	0.6176906067978579	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGT	2550	0.5544213471786477	No Hit
AAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	1760	0.3826594396213411	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	1135	0.2467718545285353	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	879	0.19111229967452206	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	759	0.16502188333670337	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	677	0.14719343217252723	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	666	0.14480181067489384	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	656	0.14262760931340895	No Hit
AATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	625	0.1358875850928058	No Hit
TACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	522	0.1134933110695114	No Hit
AACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG	501	0.10892748821039312	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	466	0.10131778344519599	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	35	1.2098099E-7	45.000004	1
ACTATTG	35	1.2098099E-7	45.000004	14
TACCCAG	35	1.2098099E-7	45.000004	1
TTAATCG	85	0.0	45.000004	20
ATCGTAG	35	1.2098099E-7	45.000004	1
GTATCTC	35	1.2098099E-7	45.000004	9
ACCGTAG	35	1.2098099E-7	45.000004	1
CCCATAG	35	1.2098099E-7	45.000004	1
TCGCGGA	35	1.2098099E-7	45.000004	34
CCTTCGC	20	7.0288696E-4	45.0	31
CTTCGTA	20	7.0288696E-4	45.0	30
TTCTATC	20	7.0288696E-4	45.0	11
TATCACT	20	7.0288696E-4	45.0	23
AGGTATT	25	3.8871432E-5	45.0	39
AGGTAAC	25	3.8871432E-5	45.0	11
CCTTAGA	20	7.0288696E-4	45.0	34
AATCCCG	20	7.0288696E-4	45.0	1
GTACCCT	20	7.0288696E-4	45.0	19
TGCCCTA	20	7.0288696E-4	45.0	13
TCGCAAC	25	3.8871432E-5	45.0	16