SRR3548819_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548819_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470364
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT	4242	0.9018547337806465	TruSeq Adapter, Index 23 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3889	0.8268064732845202	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC	2855	0.6069767244091809	No Hit
AATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	2486	0.528526843040709	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGT	2484	0.5281016404316657	No Hit
AAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	1642	0.34909134202447467	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	1023	0.21749113452560145	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	952	0.20239644190456754	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	788	0.16752982796302437	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	703	0.149458717078688	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	648	0.13776564532999974	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	619	0.13160020749887322	No Hit
AATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	574	0.12203314879540102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.0290314E-4	45.000004	28
CTTAACG	20	7.0290314E-4	45.000004	1
TTGATCT	20	7.0290314E-4	45.000004	40
TATCAGT	30	2.1627566E-6	45.000004	25
AGACTTA	30	2.1627566E-6	45.000004	24
CTAGACC	20	7.0290314E-4	45.000004	38
CGTGGGA	20	7.0290314E-4	45.000004	4
TAATACA	20	7.0290314E-4	45.000004	8
AACCGGC	20	7.0290314E-4	45.000004	28
ACTATCC	30	2.1627566E-6	45.000004	16
GTACCTA	20	7.0290314E-4	45.000004	22
CCTTACA	30	2.1627566E-6	45.000004	20
TACCCGT	35	1.2098826E-7	45.000004	35
ACCGGCC	20	7.0290314E-4	45.000004	10
TCCGCTA	20	7.0290314E-4	45.000004	31
ATTAGCG	20	7.0290314E-4	45.000004	19
GGTCGTA	20	7.0290314E-4	45.000004	9
CTACTAA	20	7.0290314E-4	45.000004	30
GATAACT	20	7.0290314E-4	45.000004	10
GTCGAGG	30	2.1627566E-6	45.000004	2