SRR3548814_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548814_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540321
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCC	11456	2.1202211278110608	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT	9958	1.8429785257282245	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT	9870	1.82669191091962	No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT	5405	1.0003312845512204	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2924	0.5411597920495409	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT	2221	0.4110519487489844	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT	1835	0.33961293379306007	No Hit
AACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG	1573	0.2911232397038057	No Hit
AAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT	1440	0.2665082423226193	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT	1158	0.21431704486777306	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT	1105	0.20450806094895443	No Hit
GGCGACGGGCAGATTGCGATTTAAAACAAACTGGTTGTTGGGCTTATCATC	1068	0.19766027972260933	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	745	0.1378810003682996	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT	596	0.11030480029463967	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	561	0.10382716940485377	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	545	0.10086596671238023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCG	45	3.8380676E-10	45.000004	1
GTAATCC	45	3.8380676E-10	45.000004	9
TAGCACG	45	3.8380676E-10	45.000004	1
ATTGCGA	145	0.0	45.000004	13
AACCGTA	40	6.8030204E-9	45.0	29
TCGCAAG	25	3.8880517E-5	45.0	1
TGCCCGT	20	7.029965E-4	45.0	9
TGCCCGA	20	7.029965E-4	45.0	33
ACACGGT	25	3.8880517E-5	45.0	3
GTCGATA	20	7.029965E-4	45.0	12
GGTGTAT	25	3.8880517E-5	45.0	9
AATCAAT	25	3.8880517E-5	45.0	13
ACGCATA	25	3.8880517E-5	45.0	32
ACGTTCG	25	3.8880517E-5	45.0	41
ACGTTAG	20	7.029965E-4	45.0	1
TAGACCG	20	7.029965E-4	45.0	1
ACGCAAT	20	7.029965E-4	45.0	27
ACCGCAC	20	7.029965E-4	45.0	22
CTATAGT	20	7.029965E-4	45.0	20
GCTATTA	20	7.029965E-4	45.0	18