##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548814_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 540321 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28835451518634 31.0 31.0 34.0 30.0 34.0 2 31.46894161063516 31.0 31.0 34.0 30.0 34.0 3 31.638394583960274 31.0 31.0 34.0 30.0 34.0 4 35.46948758238158 37.0 35.0 37.0 33.0 37.0 5 35.02654903288971 37.0 35.0 37.0 32.0 37.0 6 35.04533971472514 36.0 35.0 37.0 32.0 37.0 7 34.9584543262246 36.0 35.0 37.0 32.0 37.0 8 35.332343181183035 37.0 35.0 37.0 33.0 37.0 9 36.20257032393707 39.0 37.0 39.0 32.0 39.0 10 35.932721474827 38.0 35.0 39.0 30.0 39.0 11 36.19140103753139 38.0 35.0 39.0 32.0 39.0 12 35.69660812739094 37.0 35.0 39.0 31.0 39.0 13 35.51480138658316 37.0 35.0 39.0 30.0 39.0 14 36.470459227015056 38.0 35.0 40.0 31.0 41.0 15 36.59619744559253 38.0 35.0 40.0 31.0 41.0 16 36.56830291622943 38.0 35.0 40.0 31.0 41.0 17 36.48780262103453 38.0 35.0 40.0 31.0 41.0 18 36.24091234654955 38.0 35.0 40.0 30.0 41.0 19 36.26315097877003 38.0 34.0 40.0 30.0 41.0 20 36.287105257800455 38.0 34.0 40.0 30.0 41.0 21 36.390553023110336 38.0 35.0 40.0 31.0 41.0 22 36.342242851934316 38.0 35.0 40.0 31.0 41.0 23 36.269256608571574 38.0 35.0 40.0 31.0 41.0 24 35.870090187129506 38.0 34.0 40.0 30.0 41.0 25 35.95052200451213 38.0 34.0 40.0 30.0 41.0 26 35.86398640807964 38.0 34.0 40.0 30.0 41.0 27 35.73706555917686 38.0 34.0 40.0 29.0 41.0 28 35.77121562922781 38.0 34.0 40.0 29.0 41.0 29 35.46777933857836 37.0 34.0 40.0 29.0 41.0 30 35.38168051954301 37.0 34.0 40.0 28.0 41.0 31 35.26080237488456 37.0 34.0 40.0 27.0 41.0 32 34.94109612619165 37.0 34.0 40.0 26.0 41.0 33 35.01541861226937 37.0 34.0 40.0 27.0 41.0 34 34.8970167733625 37.0 34.0 40.0 26.0 41.0 35 34.76678678045088 37.0 33.0 40.0 25.0 41.0 36 34.70268969742061 37.0 33.0 40.0 25.0 41.0 37 34.324967935727095 37.0 33.0 40.0 24.0 41.0 38 34.35339733232652 37.0 33.0 40.0 24.0 41.0 39 34.12031551614688 36.0 33.0 40.0 23.0 41.0 40 34.01654757079588 36.0 33.0 40.0 23.0 41.0 41 34.340356935969545 37.0 33.0 40.0 24.0 41.0 42 34.30398226239587 36.0 33.0 40.0 24.0 41.0 43 34.277448035519626 36.0 33.0 40.0 24.0 41.0 44 34.06478186115291 36.0 33.0 40.0 23.0 41.0 45 33.78482605710309 36.0 33.0 39.0 23.0 41.0 46 33.632211222588055 35.0 32.0 39.0 23.0 40.0 47 33.597554046576015 35.0 32.0 39.0 23.0 40.0 48 33.61990927615251 35.0 32.0 39.0 23.0 40.0 49 33.514777326811284 35.0 32.0 39.0 22.0 40.0 50 33.26578274766296 35.0 32.0 39.0 22.0 40.0 51 31.135826666000398 34.0 28.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 2.0 10 7.0 11 10.0 12 10.0 13 24.0 14 32.0 15 49.0 16 112.0 17 253.0 18 539.0 19 935.0 20 1625.0 21 2427.0 22 3263.0 23 4226.0 24 5256.0 25 5903.0 26 6861.0 27 8242.0 28 9919.0 29 13065.0 30 16467.0 31 21234.0 32 27798.0 33 36737.0 34 57203.0 35 62325.0 36 55887.0 37 68357.0 38 78520.0 39 53029.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.340023800666643 38.11326970449048 18.499003370218816 25.047703124624064 2 21.313441454246643 38.12566974076521 19.357567075867863 21.203321729120283 3 19.040348237436636 30.056947629279634 26.43780271357212 24.464901419711616 4 24.40919379405946 31.404294854355097 18.08850664697467 26.098004704610776 5 15.727872875568414 40.12577708436281 18.486418258775803 25.659931781292972 6 20.247038334619603 34.66772529662923 23.92614760484971 21.159088763901458 7 72.83059514621864 13.007267901858341 8.27026896974206 5.891867982180963 8 75.1031331375238 6.435433751418139 5.941283052111615 12.520150058946442 9 70.44849265529194 11.03825318653171 11.54332332076673 6.969930837409614 10 41.50625276456032 28.237288574754636 13.766631317309525 16.489827343375513 11 33.21136879743708 23.024646460159794 24.203945432437386 19.56003930996574 12 29.86243362741778 23.68147823238408 30.18557487123395 16.27051326896419 13 22.86159523690547 34.940711169841634 22.220494853984945 19.977198739267955 14 15.797831289178099 34.32367055879745 32.95985164374511 16.918646508279338 15 14.27336712805906 28.834155992456335 32.49383237001708 24.39864450946752 16 16.060638028135127 24.920556484015982 35.81241521243853 23.206390275410357 17 15.36086881686997 26.70412588072646 28.504537117750374 29.430468184653197 18 19.609269304728116 27.444241478676563 27.85955015629598 25.08693906029934 19 21.045637685746065 30.987875725726006 28.3564769831267 19.61000960540123 20 24.33386820056966 31.023040007699127 24.276124748066426 20.366967043664786 21 18.715541317105945 30.13208814760115 26.31657847834898 24.83579205694393 22 18.568776708660224 30.3475156434786 25.301626255503674 25.782081392357508 23 22.454614941858637 29.35033063678813 20.114339438963135 28.0807149823901 24 17.232719068849814 34.1191624978485 26.45131320085653 22.196805232445158 25 17.993378010478956 26.34045317505705 27.063726932693715 28.60244188177028 26 22.225306808360216 31.77925714528956 22.45368956601724 23.541746480332986 27 16.059527577125447 29.892045654342514 27.361142728119027 26.68728404041301 28 21.07025268312725 27.19364970082599 26.837380001887766 24.89871761415899 29 21.854786321464463 30.05250582524092 26.541444807808688 21.551263045485925 30 22.59471684424629 30.53481171377755 22.61377958657909 24.25669185539707 31 30.516859422454427 28.35740235896809 17.575848430840185 23.54988978773729 32 24.991810423803628 29.462486188765567 20.357158059745966 25.188545327684842 33 26.072279256219915 29.513937085547294 20.22612484060401 24.18765881762878 34 21.807407078384884 26.553104543410306 21.83794448115102 29.80154389705379 35 19.591317013404993 29.473405623694067 26.31676355351726 24.618513809383682 36 29.472110097516108 26.176661651129606 24.34700853751751 20.004219713836775 37 20.651427577310525 34.08048178767806 21.022133139374557 24.24595749563685 38 25.70601549819459 31.583077466913185 22.931738725683438 19.779168309208785 39 20.659570884714825 28.91947564503323 24.845601040862746 25.5753524293892 40 21.709687389533258 29.5764924924258 23.68332898406688 25.030491133974063 41 19.118635033618904 21.321214611314385 30.24461384991514 29.315536505151567 42 24.67718263772831 23.540080803818473 25.334199485120884 26.448537073332336 43 23.418856568595334 23.215458958656058 27.240843868737286 26.124840604011318 44 21.19092169284555 23.871735505375508 25.53685679438704 29.4004860073919 45 26.682657161206023 28.21248850220517 23.684069284739998 21.42078505184881 46 19.321292342885062 25.29533369978217 32.8447348890752 22.538639068257574 47 22.725564988219965 26.346930805946833 23.80270246760722 27.12480173822598 48 21.68100073844992 20.50614357021104 33.88208120728234 23.9307744840567 49 23.83897720059002 19.693293431127053 30.55683565880282 25.910893709480103 50 20.73989350774817 22.83809069053396 25.248879832543984 31.17313596917388 51 18.431080783460203 23.044449503165712 31.64637317446481 26.87809653890928 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3593.0 1 2866.0 2 2139.0 3 1588.5 4 1038.0 5 1030.5 6 1023.0 7 1072.0 8 1121.0 9 1264.5 10 1408.0 11 1558.5 12 1709.0 13 1753.5 14 1798.0 15 1829.0 16 1860.0 17 1791.0 18 1722.0 19 1736.5 20 1751.0 21 1605.5 22 1460.0 23 1628.5 24 1797.0 25 1889.5 26 2667.5 27 3353.0 28 3826.0 29 4299.0 30 4248.0 31 4197.0 32 5269.5 33 6342.0 34 7543.5 35 8745.0 36 9241.5 37 9738.0 38 11827.0 39 13916.0 40 16391.0 41 18866.0 42 25146.0 43 31426.0 44 50306.5 45 69187.0 46 67456.5 47 65726.0 48 60676.5 49 55627.0 50 52193.0 51 48759.0 52 43362.5 53 37966.0 54 33960.0 55 29954.0 56 26846.0 57 23738.0 58 21221.5 59 18705.0 60 17513.0 61 16321.0 62 15056.5 63 13792.0 64 12248.0 65 10704.0 66 9165.0 67 7626.0 68 6449.5 69 5273.0 70 4537.5 71 3802.0 72 3232.0 73 2662.0 74 2428.0 75 1904.5 76 1615.0 77 1089.5 78 564.0 79 518.5 80 473.0 81 320.5 82 168.0 83 130.5 84 93.0 85 69.0 86 45.0 87 35.0 88 25.0 89 16.0 90 7.0 91 8.5 92 10.0 93 6.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 540321.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.11466707643122 #Duplication Level Percentage of deduplicated Percentage of total 1 79.43073905988425 23.125995233634114 2 9.120500762903722 5.310806865645577 3 3.2599498594694167 2.847370645329325 4 1.539549618996852 1.7929389841895953 5 0.8945577365571669 1.302237534025389 6 0.5826142315809548 1.017757163188218 7 0.39838881195372766 0.8119270338905421 8 0.2922636170722355 0.6807326327689376 9 0.25650029188838497 0.6721128543003986 >10 2.8549342416691514 20.13853314354474 >50 1.13077496554838 23.19551123442479 >100 0.22843938697947072 9.316299581196148 >500 0.0031727692636037605 0.5479632847051733 >1k 0.005076430821766016 2.461585571615553 >5k 0.001903661558162256 4.66175238131006 >10k+ 6.34553852720752E-4 2.116475856231445 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCC 11456 2.1202211278110608 No Hit AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 9958 1.8429785257282245 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT 9870 1.82669191091962 No Hit CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT 5405 1.0003312845512204 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2924 0.5411597920495409 No Hit AATGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT 2221 0.4110519487489844 No Hit AATGATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT 1835 0.33961293379306007 No Hit AACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG 1573 0.2911232397038057 No Hit AAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 1440 0.2665082423226193 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT 1158 0.21431704486777306 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT 1105 0.20450806094895443 No Hit GGCGACGGGCAGATTGCGATTTAAAACAAACTGGTTGTTGGGCTTATCATC 1068 0.19766027972260933 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 745 0.1378810003682996 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT 596 0.11030480029463967 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 561 0.10382716940485377 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 545 0.10086596671238023 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3334665874544946 0.0 2 0.0 0.0 0.0 1.6110793398738898 0.0 3 0.0 0.0 0.0 2.28105144904603 0.0 4 0.0 0.0 0.0 6.064913264522386 0.0 5 0.0 0.0 0.0 6.454311418582657 0.0 6 0.0 0.0 0.0 8.478478534056608 0.0 7 0.0 0.0 0.0 10.093629527632649 0.0 8 0.0 0.0 0.0 11.114504155862903 0.0 9 0.0 0.0 0.0 14.388298807560691 0.0 10 0.0 0.0 0.0 16.225354927903968 0.0 11 0.0 0.0 0.0 20.362525239626073 0.0 12 0.0 0.0 0.0 21.355268442277833 0.0 13 0.0 0.0 0.0 21.857747524156938 0.0 14 0.0 0.0 0.0 22.467940353974768 0.0 15 0.0 0.0 0.0 22.802371183056 0.0 16 0.0 0.0 0.0 23.37628927989103 0.0 17 0.0 0.0 0.0 24.006655303051335 0.0 18 0.0 0.0 0.0 24.96349392305685 0.0 19 0.0 0.0 0.0 25.323465125360666 0.0 20 0.0 0.0 0.0 25.689913958554268 0.0 21 0.0 0.0 0.0 26.04655380782905 0.0 22 0.0 0.0 0.0 26.447796772659217 0.0 23 0.0 0.0 0.0 26.85921887174476 0.0 24 0.0 0.0 0.0 27.117583806663077 0.0 25 0.0 0.0 0.0 27.364844231484618 0.0 26 0.0 0.0 0.0 27.573794096472284 0.0 27 0.0 0.0 0.0 27.820314220620705 0.0 28 0.0 0.0 0.0 28.059801488374504 0.0 29 0.0 0.0 0.0 28.284112592329375 0.0 30 0.0 0.0 0.0 28.668513716846096 0.0 31 0.0 0.0 0.0 28.930024929625166 0.0 32 0.0 0.0 0.0 29.17598982826875 0.0 33 0.0 0.0 0.0 29.44712494979836 0.0 34 0.0 0.0 0.0 29.684391315532803 0.0 35 1.8507516827959676E-4 0.0 0.0 29.96718617266403 0.0 36 1.8507516827959676E-4 0.0 0.0 30.19075697594578 0.0 37 1.8507516827959676E-4 0.0 0.0 30.417288981920006 0.0 38 1.8507516827959676E-4 0.0 0.0 30.676579292679722 0.0 39 1.8507516827959676E-4 0.0 0.0 30.904776975168463 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGCG 45 3.8380676E-10 45.000004 1 GTAATCC 45 3.8380676E-10 45.000004 9 TAGCACG 45 3.8380676E-10 45.000004 1 ATTGCGA 145 0.0 45.000004 13 AACCGTA 40 6.8030204E-9 45.0 29 TCGCAAG 25 3.8880517E-5 45.0 1 TGCCCGT 20 7.029965E-4 45.0 9 TGCCCGA 20 7.029965E-4 45.0 33 ACACGGT 25 3.8880517E-5 45.0 3 GTCGATA 20 7.029965E-4 45.0 12 GGTGTAT 25 3.8880517E-5 45.0 9 AATCAAT 25 3.8880517E-5 45.0 13 ACGCATA 25 3.8880517E-5 45.0 32 ACGTTCG 25 3.8880517E-5 45.0 41 ACGTTAG 20 7.029965E-4 45.0 1 TAGACCG 20 7.029965E-4 45.0 1 ACGCAAT 20 7.029965E-4 45.0 27 ACCGCAC 20 7.029965E-4 45.0 22 CTATAGT 20 7.029965E-4 45.0 20 GCTATTA 20 7.029965E-4 45.0 18 >>END_MODULE