SRR3548813_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548813_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	548782
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCC	10682	1.9464924141097923	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT	9180	1.6727953905193684	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT	8927	1.6266932953340307	No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT	5175	0.9429974015182714	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3051	0.5559584680255547	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT	2091	0.38102561672941165	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT	1730	0.3152435757732579	No Hit
AACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG	1511	0.27533701907132524	No Hit
AAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT	1283	0.23379046688849123	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT	1163	0.21192386047647332	No Hit
GGCGACGGGCAGATTGCGATTTAAAACAAACTGGTTGTTGGGCTTATCATC	1047	0.19078614094485608	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT	998	0.18185727665994875	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	755	0.13757739867561256	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	588	0.10714637141888764	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT	549	0.10003972433498183	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAA	20	7.030059E-4	45.000004	13
CATGGAT	20	7.030059E-4	45.000004	44
CGTGGAC	20	7.030059E-4	45.000004	22
TCGTTAC	20	7.030059E-4	45.000004	39
TCGCAAG	30	2.1634205E-6	45.000004	1
ACACGAG	30	2.1634205E-6	45.000004	1
GTCGATA	30	2.1634205E-6	45.000004	12
CTCGTCG	20	7.030059E-4	45.000004	13
CCCTAAG	20	7.030059E-4	45.000004	33
TCTTCGA	20	7.030059E-4	45.000004	12
ATGGATG	30	2.1634205E-6	45.000004	18
TTTCGGT	20	7.030059E-4	45.000004	29
ATAATGC	20	7.030059E-4	45.000004	18
CGCATTA	30	2.1634205E-6	45.000004	34
CGTTGCC	20	7.030059E-4	45.000004	25
CACGCTT	20	7.030059E-4	45.000004	14
TAAACGG	75	0.0	45.000004	2
CGCGCGT	20	7.030059E-4	45.000004	17
TGAACGG	40	6.8030204E-9	45.000004	2
ATTCGTT	20	7.030059E-4	45.000004	37