SRR3548811_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548811_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368085
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	3628	0.985641903364712	Illumina Single End Adapter 2 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCC	3590	0.9753182009590177	No Hit
AATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCT	3434	0.9329366858198515	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGT	3135	0.8517054484697828	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2886	0.7840580300745751	No Hit
AAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCT	1274	0.3461157069698575	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTT	977	0.26542782237798335	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	756	0.20538734259749786	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTT	730	0.19832375674097014	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	716	0.19452028743360908	No Hit
AACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	594	0.1613757691837483	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCT	586	0.15920235815097056	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCT	521	0.1415433935096513	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	513	0.13936998247687354	No Hit
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTCTACAGGTC	458	0.12442778162652648	No Hit
CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	390	0.10595378784791556	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTAT	389	0.10568211146881835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTTAT	25	3.8856204E-5	45.000004	44
GTCGCAA	25	3.8856204E-5	45.000004	12
CAAGTTG	25	3.8856204E-5	45.000004	1
GTATTCG	25	3.8856204E-5	45.000004	9
CACGGTA	25	3.8856204E-5	45.000004	31
CGAAACG	25	3.8856204E-5	45.000004	1
CAACGAA	25	3.8856204E-5	45.000004	23
TAGACAG	25	3.8856204E-5	45.000004	1
AGCCCGA	25	3.8856204E-5	45.000004	2
TAGAATA	25	3.8856204E-5	45.000004	32
GACAATC	30	2.161465E-6	45.000004	9
ATTACTA	30	2.161465E-6	45.000004	24
TTAGAAT	25	3.8856204E-5	45.000004	31
CGTTGAT	30	2.161465E-6	45.000004	25
TTCACCG	30	2.161465E-6	45.000004	1
AAGACGC	25	3.8856204E-5	45.000004	39
GCACGGT	25	3.8856204E-5	45.000004	30
TGAACGG	25	3.8856204E-5	45.000004	2
ATTCGTT	25	3.8856204E-5	45.000004	11
CGCGATA	25	3.8856204E-5	45.000004	11