SRR3548810_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548810_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	364224
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCC	4327	1.1880051836232648	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCT	3957	1.0864193463363205	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGT	3526	0.96808557371288	No Hit
CTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGCT	2801	0.7690322438938675	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2299	0.6312049727640133	No Hit
AAACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCT	998	0.2740072043577579	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTT	892	0.24490423475663328	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTT	791	0.21717404674046742	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCT	728	0.19987699876998768	No Hit
AACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	579	0.15896810753821825	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	533	0.14633851695659814	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	517	0.1419456158847303	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTAT	444	0.12190300474433316	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	444	0.12190300474433316	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCT	430	0.11805921630644878	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	35	1.208864E-7	45.000004	2
GCTTGCG	35	1.208864E-7	45.000004	1
CCTTCGT	25	3.885541E-5	45.0	32
GTTTGAC	20	7.0269336E-4	45.0	29
AACCGTT	20	7.0269336E-4	45.0	16
TTAGGAT	25	3.885541E-5	45.0	39
TAATAGG	80	0.0	45.0	2
ACTATCG	25	3.885541E-5	45.0	1
GTACCTT	20	7.0269336E-4	45.0	7
AATCCGA	25	3.885541E-5	45.0	27
CTCACCG	20	7.0269336E-4	45.0	1
GCCCACG	20	7.0269336E-4	45.0	1
TACCCCC	20	7.0269336E-4	45.0	24
ACCGGGT	75	0.0	45.0	4
CTACTTG	20	7.0269336E-4	45.0	1
GTCGATA	20	7.0269336E-4	45.0	44
GGTAATC	25	3.885541E-5	45.0	8
GATCGCG	20	7.0269336E-4	45.0	9
ATAGGCG	20	7.0269336E-4	45.0	1
GTTTCGA	25	3.885541E-5	45.0	23