SRR3548805_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548805_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367192
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1577	0.4294755877034358	No Hit
CTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGCT	1575	0.4289309135275279	Illumina Single End Adapter 2 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCC	1367	0.37228479923309876	No Hit
AATCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT	1091	0.2971197629577987	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGT	901	0.2453757162465413	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	654	0.1781084555219068	No Hit
AAACTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT	622	0.16939366870737924	No Hit
CTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCTGTCTCTTAT	552	0.1503300725506002	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTT	468	0.1274537571624654	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	396	0.10784548682977843	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	369	0.10049238545502082	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACTG	45	3.8380676E-10	45.000004	1
ACGCATG	35	1.2089004E-7	45.000004	1
ATAGCGG	45	3.8380676E-10	45.000004	2
CCTCGCG	35	1.2089004E-7	45.000004	1
AATGCGG	45	3.8380676E-10	45.000004	2
ATAAGCG	35	1.2089004E-7	45.000004	33
TTTGCGC	45	3.8380676E-10	45.000004	13
CCGCACG	35	1.2089004E-7	45.000004	1
AGGTACG	20	7.0270087E-4	45.0	24
ACTATCC	20	7.0270087E-4	45.0	43
AACCGCG	25	3.8856022E-5	45.0	1
TCGTTGT	20	7.0270087E-4	45.0	35
GCCTTGT	20	7.0270087E-4	45.0	45
GATACAC	20	7.0270087E-4	45.0	30
ACCGGTA	25	3.8856022E-5	45.0	29
ACACGTA	20	7.0270087E-4	45.0	25
TCGCACG	25	3.8856022E-5	45.0	1
CGAACCG	25	3.8856022E-5	45.0	28
TCCGCGA	40	6.7939254E-9	45.0	33
TCCGCAC	20	7.0270087E-4	45.0	8