##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548805_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 367192 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26946937841783 31.0 31.0 34.0 28.0 34.0 2 31.48205026253295 31.0 31.0 34.0 30.0 34.0 3 31.456943506394474 31.0 31.0 34.0 28.0 34.0 4 35.47443571755376 37.0 35.0 37.0 33.0 37.0 5 35.158181550796314 37.0 35.0 37.0 32.0 37.0 6 35.217510185407086 37.0 35.0 37.0 32.0 37.0 7 35.16186082485457 37.0 35.0 37.0 32.0 37.0 8 35.523216736748076 37.0 35.0 37.0 33.0 37.0 9 35.902546896446545 39.0 37.0 39.0 32.0 39.0 10 35.81615067866402 38.0 35.0 39.0 30.0 39.0 11 36.21088694742805 38.0 35.0 39.0 32.0 39.0 12 35.82133870018955 37.0 35.0 39.0 31.0 39.0 13 35.45295921479771 37.0 35.0 39.0 30.0 39.0 14 36.47993965010131 38.0 35.0 40.0 31.0 41.0 15 36.6067506917362 38.0 35.0 40.0 31.0 41.0 16 36.69808982766509 38.0 35.0 40.0 32.0 41.0 17 36.659818296694915 38.0 35.0 40.0 32.0 41.0 18 36.55027614980718 38.0 35.0 40.0 31.0 41.0 19 36.57291825529968 38.0 35.0 40.0 31.0 41.0 20 36.482240898494524 38.0 35.0 40.0 31.0 41.0 21 36.48432700058825 38.0 35.0 40.0 31.0 41.0 22 36.463378831782826 38.0 35.0 40.0 31.0 41.0 23 36.39470086494259 38.0 35.0 40.0 31.0 41.0 24 35.99626898189503 38.0 34.0 40.0 30.0 41.0 25 36.10115144120787 38.0 35.0 40.0 30.0 41.0 26 36.0241590230724 38.0 34.0 40.0 30.0 41.0 27 35.92402612257348 38.0 34.0 40.0 30.0 41.0 28 35.8062376086625 38.0 34.0 40.0 30.0 41.0 29 35.598054968517836 37.0 34.0 40.0 29.0 41.0 30 35.53584228414562 37.0 34.0 40.0 29.0 41.0 31 35.45110732259962 37.0 34.0 40.0 29.0 41.0 32 35.34104773524478 37.0 34.0 40.0 29.0 41.0 33 35.189385934334084 37.0 34.0 40.0 27.0 41.0 34 35.18367230222881 37.0 34.0 40.0 27.0 41.0 35 35.03023758687553 37.0 34.0 40.0 27.0 41.0 36 34.863534608597135 37.0 34.0 40.0 26.0 41.0 37 34.72928059434846 37.0 33.0 40.0 26.0 41.0 38 34.641835878777314 37.0 33.0 40.0 26.0 41.0 39 34.52350813743219 36.0 33.0 40.0 25.0 41.0 40 34.35476535436502 36.0 33.0 40.0 24.0 41.0 41 34.38138085797076 36.0 33.0 40.0 24.0 41.0 42 34.35287533497462 36.0 33.0 40.0 24.0 41.0 43 34.28094838667509 36.0 33.0 40.0 24.0 41.0 44 34.2533279592148 36.0 33.0 40.0 24.0 41.0 45 34.09429944007495 36.0 33.0 40.0 24.0 41.0 46 33.94092463888102 35.0 33.0 39.0 23.0 41.0 47 33.78522407895597 35.0 33.0 39.0 23.0 41.0 48 33.746465064598354 35.0 33.0 39.0 23.0 41.0 49 33.56634131462559 35.0 33.0 39.0 23.0 40.0 50 33.42951916163751 35.0 32.0 39.0 23.0 40.0 51 31.67328264232336 34.0 29.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 3.0 12 4.0 13 18.0 14 28.0 15 54.0 16 76.0 17 191.0 18 359.0 19 618.0 20 1140.0 21 1618.0 22 2200.0 23 2812.0 24 3416.0 25 3932.0 26 4500.0 27 5345.0 28 6512.0 29 8050.0 30 9929.0 31 13308.0 32 17232.0 33 24198.0 34 40059.0 35 42134.0 36 35977.0 37 46778.0 38 56593.0 39 40101.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.443528181441863 32.273034270899146 20.968594087017145 26.314843460641846 2 23.753513148434607 32.29563824919933 20.143140373428615 23.80770822893745 3 20.95770060349899 32.578868820671474 20.24254341053182 26.220887165297718 4 21.50400880193468 33.468594087017145 18.374310987167476 26.653086123880694 5 17.467973158456612 36.35128216301008 17.68856619969934 28.492178478833964 6 20.553824702063224 38.19990631604174 19.29263164774832 21.953637334146713 7 81.45629534412514 8.121364299875815 5.452460837926752 4.969879518072289 8 84.02171071265168 6.311412013333624 4.203795289657727 5.463081984356958 9 75.97469443778732 12.048192771084338 7.7564326020174725 4.220680189110873 10 46.12954530599795 27.448310420706335 11.808263796596876 14.61388047669884 11 37.29247913897906 25.880193468267283 20.548650297392097 16.278677095361555 12 35.59990413734504 23.294352818144187 24.57079674938452 16.534946295126254 13 25.49075143249308 34.11239896294037 21.354223403559992 19.042626201006556 14 18.98352905292054 35.18104969607181 27.18005838907166 18.65536286193599 15 16.990838580361228 27.838297130656443 35.28481012658228 19.88605416240005 16 18.339179502821413 24.218120220484106 34.80740321139894 22.63529706529554 17 17.123466742194818 25.26362230113946 28.158293209002377 29.45461774766335 18 22.199830061657117 25.82981110699579 26.940129414584195 25.030229416762893 19 24.25461339026994 31.105797511928362 23.739079282773044 20.900509815028652 20 27.004400967341336 28.774047364866334 22.529085600993486 21.69246606679884 21 22.780452733175014 30.86423451491318 22.99614370683457 23.359169045077234 22 20.924203141680646 28.384060654916226 23.454759362949083 27.23697684045404 23 22.026623673718383 29.960892394169807 21.502374779406956 26.510109152704853 24 19.907568792348417 29.286313427307785 27.91809189742696 22.88802588291684 25 19.53882437525872 28.529488659883658 25.75546308198436 26.176223882873266 26 22.087082507244165 32.09547048955315 22.762750822458006 23.05469618074468 27 18.288797141549924 31.122682411381515 24.930554042571735 25.65796640449683 28 19.78202139480163 29.71088694742805 28.857110176692302 21.64998148107802 29 21.821826183576984 28.179807838950737 28.0403712499183 21.957994727553977 30 22.171779341597855 31.16761803089392 24.05934769820693 22.60125492930129 31 29.324440619621345 28.785485522560407 19.07557898864899 22.814494869169263 32 29.0997625220593 28.65149567528704 20.045643695941088 22.203098106712567 33 26.051765833678292 29.579348133946276 21.149698250506546 23.219187781868886 34 23.846924769602822 28.727750059914158 22.538889736159827 24.886435434323186 35 22.718359877121504 30.75366565720386 24.255702738621757 22.27227172705288 36 28.659665787925665 28.331227259853154 23.708849866010155 19.30025708621103 37 24.489367960086277 32.78067060284538 21.231944051068652 21.498017385999695 38 23.90656659186475 31.03444519488442 22.359147258110198 22.699840955140633 39 24.681365607093834 29.29230484324277 23.153554543671977 22.872775005991418 40 24.994825595328873 28.72720538573825 21.78260964291161 24.495359376021263 41 21.475958081875422 24.510610252946687 26.744591385433235 27.268840279744655 42 25.769079936382056 26.48804984858058 21.39943136016035 26.34343885487701 43 22.65245430183664 25.91723131222902 25.295758077518027 26.134556308416308 44 22.41388701278895 26.99704786596658 24.82216388156605 25.766901239678425 45 22.821575633456067 28.93690494346282 24.518780365585307 23.722739057495808 46 23.022288067278154 27.214100525065906 27.68715004684198 22.076461360813962 47 22.632029020240093 27.849462951262556 25.457253970674742 24.06125405782261 48 24.659578640057518 21.589522647552233 29.263981786095556 24.48691692629469 49 21.37873374147585 23.413091788492125 29.01343166517789 26.194742804854137 50 20.976491862567812 26.26663979607399 26.458365105993593 26.298503235364606 51 21.42938843983529 27.055872676964636 26.949661212662583 24.565077670537487 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1977.0 1 1630.5 2 1284.0 3 964.5 4 645.0 5 648.5 6 652.0 7 714.0 8 776.0 9 848.0 10 920.0 11 1001.5 12 1083.0 13 1143.0 14 1203.0 15 1181.0 16 1159.0 17 1097.0 18 1035.0 19 1029.5 20 1024.0 21 1034.5 22 1045.0 23 1207.5 24 1370.0 25 1378.0 26 1523.5 27 1661.0 28 2222.0 29 2783.0 30 2929.0 31 3075.0 32 4096.0 33 5117.0 34 6137.5 35 7158.0 36 8103.5 37 9049.0 38 9181.0 39 9313.0 40 11802.0 41 14291.0 42 18353.0 43 22415.0 44 28637.5 45 34860.0 46 35129.0 47 35398.0 48 34437.0 49 33476.0 50 32621.0 51 31766.0 52 28739.0 53 25712.0 54 23223.0 55 20734.0 56 19201.5 57 17669.0 58 16948.0 59 16227.0 60 15852.0 61 15477.0 62 13712.5 63 11948.0 64 10954.0 65 9960.0 66 8509.5 67 7059.0 68 6018.5 69 4978.0 70 4284.0 71 3590.0 72 3055.0 73 2520.0 74 2200.5 75 1625.5 76 1370.0 77 1150.0 78 930.0 79 681.5 80 433.0 81 380.5 82 328.0 83 280.5 84 233.0 85 164.5 86 96.0 87 70.5 88 45.0 89 42.0 90 39.0 91 35.5 92 32.0 93 20.0 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 367192.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.86377247292443 #Duplication Level Percentage of deduplicated Percentage of total 1 76.92925790570214 22.2046859670111 2 9.81896705000913 5.66824861701211 3 3.367705073197059 2.916140189660197 4 1.6177376675669874 1.8677604783013195 5 0.9104358585725985 1.3139306736515544 6 0.5845620997286569 1.0123600465717748 7 0.4102680308963539 0.8289318167694965 8 0.32661783184342635 0.754193822714284 9 0.30869305591834856 0.8019041516999056 >10 4.313734357245698 31.144044589414356 >50 1.3204089830167762 25.377523044091355 >100 0.08364581792866455 3.713475408630941 >500 0.003983134187079264 0.7843710828292445 >1k 0.003983134187079264 1.6124301116423823 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1577 0.4294755877034358 No Hit CTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGCT 1575 0.4289309135275279 Illumina Single End Adapter 2 (95% over 23bp) AATGATACGGCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCC 1367 0.37228479923309876 No Hit AATCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT 1091 0.2971197629577987 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGT 901 0.2453757162465413 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 654 0.1781084555219068 No Hit AAACTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCT 622 0.16939366870737924 No Hit CTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCTGTCTCTTAT 552 0.1503300725506002 No Hit AAAAACTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTT 468 0.1274537571624654 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 396 0.10784548682977843 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 369 0.10049238545502082 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7290463844528203 0.0 2 0.0 0.0 0.0 0.9338438745942177 0.0 3 0.0 0.0 0.0 1.2219765136495349 0.0 4 0.0 0.0 0.0 2.767489487788405 0.0 5 0.0 0.0 0.0 3.057256149371446 0.0 6 0.0 0.0 0.0 4.388439835290529 0.0 7 0.0 0.0 0.0 5.435031264297697 0.0 8 0.0 0.0 0.0 6.284450641626179 0.0 9 0.0 0.0 0.0 7.5312098302795265 0.0 10 0.0 0.0 0.0 9.093607703871545 0.0 11 0.0 0.0 0.0 10.896751563214885 0.0 12 0.0 0.0 0.0 11.670461230092158 0.0 13 0.0 0.0 0.0 12.071069086472471 0.0 14 0.0 0.0 0.0 12.429192357131964 0.0 15 0.0 0.0 0.0 12.670210679971241 0.0 16 0.0 0.0 0.0 13.099686267674677 0.0 17 0.0 0.0 0.0 13.60269286912569 0.0 18 0.0 0.0 0.0 14.288437656593825 0.0 19 0.0 0.0 0.0 14.566493823394845 0.0 20 0.0 0.0 0.0 14.85653282206584 0.0 21 0.0 0.0 0.0 15.170265147388832 0.0 22 0.0 0.0 0.0 15.50632911392405 0.0 23 0.0 0.0 0.0 15.872077823046254 0.0 24 0.0 0.0 0.0 16.132704416218218 0.0 25 5.446741759079719E-4 0.0 0.0 16.362556918451382 0.0 26 5.446741759079719E-4 0.0 0.0 16.54883548661191 0.0 27 5.446741759079719E-4 0.0 0.0 16.771879561646223 0.0 28 5.446741759079719E-4 0.0 0.0 16.971502647116495 0.0 29 5.446741759079719E-4 0.0 0.0 17.175755463081984 0.0 30 5.446741759079719E-4 0.0 0.0 17.49874724939541 0.0 31 5.446741759079719E-4 0.0 0.0 17.724514695309267 0.0 32 5.446741759079719E-4 0.0 0.0 17.9557288829822 0.0 33 5.446741759079719E-4 0.0 0.0 18.20518965554805 0.0 34 5.446741759079719E-4 0.0 0.0 18.439127214100527 0.0 35 5.446741759079719E-4 0.0 0.0 18.70465587485566 0.0 36 5.446741759079719E-4 0.0 0.0 18.926882938626115 0.0 37 5.446741759079719E-4 0.0 0.0 19.144752608989304 0.0 38 5.446741759079719E-4 0.0 0.0 19.377328482102005 0.0 39 5.446741759079719E-4 0.0 0.0 19.610721366478572 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACTG 45 3.8380676E-10 45.000004 1 ACGCATG 35 1.2089004E-7 45.000004 1 ATAGCGG 45 3.8380676E-10 45.000004 2 CCTCGCG 35 1.2089004E-7 45.000004 1 AATGCGG 45 3.8380676E-10 45.000004 2 ATAAGCG 35 1.2089004E-7 45.000004 33 TTTGCGC 45 3.8380676E-10 45.000004 13 CCGCACG 35 1.2089004E-7 45.000004 1 AGGTACG 20 7.0270087E-4 45.0 24 ACTATCC 20 7.0270087E-4 45.0 43 AACCGCG 25 3.8856022E-5 45.0 1 TCGTTGT 20 7.0270087E-4 45.0 35 GCCTTGT 20 7.0270087E-4 45.0 45 GATACAC 20 7.0270087E-4 45.0 30 ACCGGTA 25 3.8856022E-5 45.0 29 ACACGTA 20 7.0270087E-4 45.0 25 TCGCACG 25 3.8856022E-5 45.0 1 CGAACCG 25 3.8856022E-5 45.0 28 TCCGCGA 40 6.7939254E-9 45.0 33 TCCGCAC 20 7.0270087E-4 45.0 8 >>END_MODULE