SRR3548804_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548804_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353300
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2354	0.6662892725728843	No Hit
CTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGCT	2291	0.6484574016416643	No Hit
AATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT	1292	0.3656948768751769	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCC	1255	0.35522219077271444	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGT	1137	0.32182281347296915	No Hit
AAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT	1005	0.28446079818850833	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTT	827	0.23407868666855364	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	584	0.16529861307670535	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	450	0.1273705066515709	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	424	0.12001132182281349	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCT	378	0.10699122558731956	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	20	7.026647E-4	45.0	1
CTTCGTC	25	3.885303E-5	45.0	37
AACCGTC	20	7.026647E-4	45.0	29
GGTACTA	20	7.026647E-4	45.0	8
GACAGAC	20	7.026647E-4	45.0	9
GTCGCGA	20	7.026647E-4	45.0	11
AGTCCGA	25	3.885303E-5	45.0	41
GCCTTAT	25	3.885303E-5	45.0	24
GAAGCGT	20	7.026647E-4	45.0	12
GTTCTAC	20	7.026647E-4	45.0	12
TCCGCGC	25	3.885303E-5	45.0	21
CCCTCAT	25	3.885303E-5	45.0	37
CCTAGGT	25	3.885303E-5	45.0	24
TTAGCCG	25	3.885303E-5	45.0	1
AACCCCG	20	7.026647E-4	45.0	1
ACCGCGA	20	7.026647E-4	45.0	44
ACACCCG	35	1.2087366E-7	45.0	1
CGTGACC	25	3.885303E-5	45.0	39
ATGTGCG	25	3.885303E-5	45.0	1
CGCATAG	25	3.885303E-5	45.0	1