SRR3548802_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548802_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	553993
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	2611	0.471305594114005	Illumina PCR Primer Index 6 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	2406	0.43430151644515363	Illumina PCR Primer Index 6 (95% over 24bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	2242	0.4046982543100725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2194	0.39603388490468294	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGT	2033	0.36697214585743865	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1090	0.19675338858072214	No Hit
AAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	821	0.14819681837135126	Illumina PCR Primer Index 6 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTT	722	0.13032655647273522	No Hit
AACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTG	585	0.10559700212818574	Illumina PCR Primer Index 6 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTTA	20	7.030117E-4	45.000004	35
CGAACCG	20	7.030117E-4	45.000004	1
CATATGT	20	7.030117E-4	45.000004	40
GTTTCGA	20	7.030117E-4	45.000004	26
TAGACTC	20	7.030117E-4	45.000004	43
TTAGCGT	20	7.030117E-4	45.000004	24
TCACACG	30	2.1634569E-6	45.000004	1
TCCGAAC	20	7.030117E-4	45.000004	29
ATCAGCG	20	7.030117E-4	45.000004	1
CAGCACG	40	6.8048394E-9	45.000004	1
ACACAAT	20	7.030117E-4	45.000004	35
TTCGTGC	20	7.030117E-4	45.000004	41
CTAAGCG	20	7.030117E-4	45.000004	1
GAATACG	20	7.030117E-4	45.000004	1
CGTTCCC	30	2.1634569E-6	45.000004	16
ATGTACG	20	7.030117E-4	45.000004	1
ACTAGGT	20	7.030117E-4	45.000004	31
TGCGAAG	20	7.030117E-4	45.000004	1
AATCTTC	30	2.1634569E-6	45.000004	39
AATCTCG	20	7.030117E-4	45.000004	18