SRR3548801_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548801_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	569434
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	2449	0.4300761809094645	Illumina PCR Primer Index 6 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2241	0.3935486816733809	No Hit
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	2177	0.3823094511392014	Illumina PCR Primer Index 6 (95% over 24bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	2125	0.3731775763301805	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGT	1934	0.3396354977047384	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1083	0.19018885419556963	No Hit
AAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	766	0.13451954045596154	Illumina PCR Primer Index 6 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTT	659	0.1157289519066301	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	25	3.8883176E-5	45.0	1
CCTTAGG	25	3.8883176E-5	45.0	28
TCCGCAA	20	7.0302846E-4	45.0	32
GTATTCG	25	3.8883176E-5	45.0	25
ACGTTAG	20	7.0302846E-4	45.0	1
TTAGCCG	40	6.8048394E-9	45.0	1
TCCGAAC	20	7.0302846E-4	45.0	29
TCTTCGA	25	3.8883176E-5	45.0	32
TTTCGAA	20	7.0302846E-4	45.0	20
CGTGAGC	20	7.0302846E-4	45.0	13
GGCAATC	40	6.8048394E-9	45.0	8
ACTCTAC	20	7.0302846E-4	45.0	44
ATAGCGC	25	3.8883176E-5	45.0	14
ATAGCCG	25	3.8883176E-5	45.0	1
AAGACCG	20	7.0302846E-4	45.0	31
TAAACCA	20	7.0302846E-4	45.0	30
CCGTGAC	20	7.0302846E-4	45.0	29
CGACCGA	20	7.0302846E-4	45.0	13
TTCGTGC	20	7.0302846E-4	45.0	39
TTCGTGA	25	3.8883176E-5	45.0	28