SRR3548800_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548800_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	291990
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	2885	0.9880475358745162	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT	2293	0.7853008664680297	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	2281	0.7811911366827631	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2179	0.7462584335079968	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	2023	0.6928319462995308	No Hit
AAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	716	0.2452138771875749	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	550	0.18836261515805336	No Hit
AATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	527	0.18048563306962567	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	517	0.17706085824857015	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT	414	0.14178567759169836	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	397	0.135963560395904	No Hit
AACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	362	0.12397684852220967	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTAT	348	0.11918216377273193	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT	303	0.10377067707798213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCATAT	30	2.1599208E-6	45.000004	31
GCTAATG	30	2.1599208E-6	45.000004	1
TGCGTAG	30	2.1599208E-6	45.000004	1
TGATCGG	25	3.8836348E-5	45.0	2
CTATGTG	20	7.024633E-4	45.0	13
TAATAGT	20	7.024633E-4	45.0	42
GCCCACA	20	7.024633E-4	45.0	27
AAATCCG	25	3.8836348E-5	45.0	1
CAAGTTT	20	7.024633E-4	45.0	11
TGCCAGT	20	7.024633E-4	45.0	24
CAAAACG	20	7.024633E-4	45.0	1
CGCGGAT	20	7.024633E-4	45.0	23
GCGGTCA	20	7.024633E-4	45.0	40
CGTGCCC	25	3.8836348E-5	45.0	24
GCAACCG	20	7.024633E-4	45.0	1
TAGGTGC	20	7.024633E-4	45.0	21
TAAACGG	45	3.8198777E-10	45.0	2
GGATCAC	35	1.2077726E-7	45.0	8
TGACGTT	20	7.024633E-4	45.0	25
CACGACC	35	1.2077726E-7	45.0	27