##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548800_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 291990 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.453460734956675 31.0 31.0 34.0 30.0 34.0 2 31.627703003527518 31.0 31.0 34.0 30.0 34.0 3 31.812873728552347 31.0 31.0 34.0 30.0 34.0 4 35.629247576971814 37.0 35.0 37.0 33.0 37.0 5 35.2266755710812 37.0 35.0 37.0 33.0 37.0 6 35.228542073358675 37.0 35.0 37.0 32.0 37.0 7 35.166115277920476 37.0 35.0 37.0 32.0 37.0 8 35.503277509503754 37.0 35.0 37.0 33.0 37.0 9 36.398065002226105 39.0 37.0 39.0 32.0 39.0 10 36.134045686496115 38.0 35.0 39.0 31.0 39.0 11 36.330525017980065 38.0 35.0 39.0 32.0 39.0 12 35.807147505051546 37.0 35.0 39.0 31.0 39.0 13 35.47595808075619 37.0 35.0 39.0 30.0 39.0 14 36.458762286379674 38.0 35.0 40.0 31.0 41.0 15 36.57648549607863 38.0 35.0 40.0 31.0 41.0 16 36.591705195383405 38.0 35.0 40.0 31.0 41.0 17 36.56343025446077 38.0 35.0 40.0 31.0 41.0 18 36.34272406589267 38.0 35.0 40.0 31.0 41.0 19 36.326500907565325 38.0 35.0 40.0 31.0 41.0 20 36.320685639919176 38.0 34.0 40.0 31.0 41.0 21 36.364574129251004 38.0 35.0 40.0 31.0 41.0 22 36.35838898592417 38.0 35.0 40.0 31.0 41.0 23 36.28582828179047 38.0 35.0 40.0 31.0 41.0 24 35.938470495564914 38.0 34.0 40.0 30.0 41.0 25 36.054539539025306 38.0 34.0 40.0 30.0 41.0 26 35.918863659714376 38.0 34.0 40.0 30.0 41.0 27 35.849700332203156 38.0 34.0 40.0 30.0 41.0 28 35.82797356073838 38.0 34.0 40.0 30.0 41.0 29 35.513794992979214 37.0 34.0 40.0 29.0 41.0 30 35.5457549916093 37.0 34.0 40.0 29.0 41.0 31 35.31671975067639 37.0 34.0 40.0 29.0 41.0 32 35.231124353573755 37.0 34.0 40.0 28.0 41.0 33 35.24626185828282 37.0 34.0 40.0 28.0 41.0 34 35.074571046953665 37.0 34.0 40.0 27.0 41.0 35 34.932333299085585 37.0 34.0 40.0 27.0 41.0 36 34.64617623891229 37.0 33.0 40.0 25.0 41.0 37 34.54212130552416 36.0 33.0 40.0 25.0 41.0 38 34.444429603753555 36.0 33.0 40.0 25.0 41.0 39 34.28582828179047 36.0 33.0 40.0 24.0 41.0 40 34.139655467653 36.0 33.0 40.0 24.0 41.0 41 34.16394739545875 36.0 33.0 40.0 24.0 41.0 42 34.01694236103976 36.0 33.0 40.0 23.0 41.0 43 33.8110928456454 35.0 33.0 40.0 23.0 41.0 44 33.61462378848591 35.0 33.0 39.0 23.0 41.0 45 33.287064625500875 35.0 32.0 39.0 21.0 41.0 46 33.14967635877941 35.0 32.0 39.0 21.0 40.0 47 33.04092605911161 35.0 32.0 39.0 20.0 40.0 48 33.019853419637656 35.0 32.0 39.0 20.0 40.0 49 32.90756190280489 35.0 32.0 39.0 20.0 40.0 50 32.59416418370492 35.0 31.0 39.0 18.0 40.0 51 30.73406623514504 34.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 0.0 10 4.0 11 4.0 12 5.0 13 7.0 14 19.0 15 31.0 16 74.0 17 145.0 18 251.0 19 502.0 20 881.0 21 1359.0 22 1883.0 23 2290.0 24 2806.0 25 3382.0 26 4023.0 27 4710.0 28 5671.0 29 6992.0 30 8628.0 31 11212.0 32 14221.0 33 19618.0 34 32970.0 35 34274.0 36 27474.0 37 35050.0 38 43239.0 39 30261.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.903421350046237 36.284804274118976 19.59827391349019 24.2135004623446 2 21.839789033871025 36.06048152333984 20.051714099797938 22.0480153429912 3 19.524641254837494 32.09561971300387 23.01106202267201 25.36867700948663 4 21.350731189424295 32.23603548066715 19.10818863659714 27.305044693311416 5 16.51563409705812 38.25302236377958 18.747217370457893 26.484126168704407 6 20.774341587040652 36.84646734477208 21.216822493921025 21.162368574266242 7 77.0879139696565 10.785643343950134 6.7885886502962425 5.337854036097127 8 80.1479502722696 6.709476351929861 4.949142093907326 8.193431281893215 9 74.80153429911984 10.914757354703928 9.36025206342683 4.923456282749409 10 45.03544641939792 29.029076338230762 11.075721771293537 14.859755471077776 11 36.43001472653173 24.025480324668653 22.627144765231684 16.91736018356793 12 33.90938045823487 22.987431076406725 26.961882256241655 16.141306209116753 13 25.087845474160076 34.711120243843965 21.96650570225008 18.23452857974588 14 16.956402616527964 34.74331312716189 29.813007294770365 18.487276961539777 15 15.142641871296963 27.991027089968835 35.02071988766738 21.84561115106682 16 17.163259015719717 25.30155142299394 34.825165245385115 22.71002431590123 17 17.895475872461386 25.51217507448885 27.43792595636837 29.15442309668139 18 21.42744614541594 26.364601527449572 27.28620843179561 24.92174389533888 19 23.56861536353985 32.03363128874276 25.38066372136032 19.017089626357066 20 26.348162608308506 30.327750950375016 22.640843864515908 20.683242576800577 21 20.97777321141135 31.457241686359122 23.322374053905957 24.242611048323575 22 20.436316312202475 29.46162539813007 24.632692900441796 25.469365389225658 23 21.973697729374294 30.163704236446453 21.012705914586117 26.84989211959314 24 19.558546525565944 31.50587348881811 26.539949998287614 22.395629987328334 25 19.393814856673174 26.655364909757186 26.532757971163395 27.418062262406245 26 20.28014658036234 33.65354977910203 22.620295215589575 23.44600842494606 27 18.156786191307923 29.69279769855132 26.97215658070482 25.178259529435937 28 20.23630946265283 27.844104250145552 30.39864378917086 21.520942498030752 29 18.99037638275283 32.06993390184596 27.36395082023357 21.575738895167643 30 25.013870338025274 27.295112846330355 27.179012979896573 20.512003835747798 31 29.422925442652147 28.90509948970855 20.10342819959588 21.568546868043427 32 27.978697900613035 29.00750025685811 20.784273434021713 22.22952840850714 33 27.433473749100994 25.99712318915031 25.16798520497277 21.401417856775918 34 21.28052330559266 28.602691873009352 23.58710914757355 26.52967567382445 35 24.814548443439843 26.87489297578684 28.23692592212062 20.07363265865269 36 26.62625432377821 28.107126956402617 26.450220897975957 18.816397821843214 37 25.341278810918183 31.47368060550019 21.47128326312545 21.713757320456182 38 26.383437788965374 28.56125209767458 24.238501318538304 20.81680879482174 39 22.528511250385286 28.03760402753519 25.500188362615155 23.933696359464367 40 26.05431692866194 25.481009623617247 24.000821945957053 24.46385150176376 41 21.14181992533991 21.184972088085207 29.042432960032876 28.630775026542004 42 27.274221719921915 24.373437446487895 22.214459399294498 26.137881434295696 43 24.168635912188773 24.468988663995344 25.05496763587794 26.30740778793794 44 22.19048597554711 24.67310524333025 25.500188362615155 27.636220418507484 45 25.2806602965855 27.64580978800644 23.894996403986436 23.178533511421623 46 22.209322237062914 25.900887016678652 29.469502380218497 22.420288366039934 47 22.95421076064249 25.891297647179695 25.407376964964552 25.747114627213264 48 23.5778622555567 20.657214288160553 31.992876468372206 23.772046987910546 49 23.268262611733277 20.44111099695195 30.106510496934824 26.184115894379943 50 20.420562348025616 24.236103976163566 26.917702661050036 28.42563101476078 51 20.2407616699202 23.992260008904413 29.91746292681256 25.84951539436282 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2492.0 1 2000.5 2 1509.0 3 1033.5 4 558.0 5 544.5 6 531.0 7 578.0 8 625.0 9 689.0 10 753.0 11 841.0 12 929.0 13 970.5 14 1012.0 15 989.5 16 967.0 17 951.5 18 936.0 19 959.0 20 982.0 21 932.5 22 883.0 23 876.5 24 870.0 25 1235.5 26 1688.0 27 1775.0 28 2148.0 29 2521.0 30 2454.5 31 2388.0 32 2997.5 33 3607.0 34 4432.5 35 5258.0 36 5225.0 37 5192.0 38 5677.5 39 6163.0 40 8361.5 41 10560.0 42 14116.0 43 17672.0 44 23790.0 45 29908.0 46 30883.5 47 31859.0 48 30193.5 49 28528.0 50 26678.0 51 24828.0 52 22905.0 53 20982.0 54 18857.5 55 16733.0 56 15133.0 57 13533.0 58 12538.0 59 11543.0 60 11258.5 61 10974.0 62 10685.5 63 10397.0 64 8896.5 65 7396.0 66 6281.0 67 5166.0 68 4222.0 69 3278.0 70 2889.0 71 2500.0 72 1995.0 73 1490.0 74 1403.5 75 1043.0 76 769.0 77 623.5 78 478.0 79 368.0 80 258.0 81 191.0 82 124.0 83 80.0 84 36.0 85 28.5 86 21.0 87 18.5 88 16.0 89 25.0 90 34.0 91 31.0 92 28.0 93 18.5 94 9.0 95 5.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 291990.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.75081338402 #Duplication Level Percentage of deduplicated Percentage of total 1 80.90391581852683 27.30572964827563 2 7.762635846127306 5.239905476214939 3 2.5337649291215536 2.565498818452687 4 1.21158002617987 1.635672454536114 5 0.7123359952916822 1.202095962190486 6 0.5307004637287035 1.0746943388472208 7 0.40284528508660666 0.9517449227713278 8 0.3612416158459244 0.9753758690366109 9 0.2891962374047428 0.8784547416007397 >10 4.663669849516484 38.9263330935991 >50 0.5783924748094856 11.966848179732184 >100 0.04058894560066566 2.49289359224631 >500 0.0040588945600665656 0.7911229836638242 >1k 0.005073618200083207 3.993629918832837 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC 2885 0.9880475358745162 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT 2293 0.7853008664680297 No Hit AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 2281 0.7811911366827631 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2179 0.7462584335079968 No Hit CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT 2023 0.6928319462995308 No Hit AAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 716 0.2452138771875749 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 550 0.18836261515805336 No Hit AATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT 527 0.18048563306962567 No Hit AAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT 517 0.17706085824857015 No Hit AATGATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT 414 0.14178567759169836 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 397 0.135963560395904 No Hit AACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG 362 0.12397684852220967 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTAT 348 0.11918216377273193 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT 303 0.10377067707798213 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0565430322956266 0.0 2 0.0 0.0 0.0 1.3431966848179733 0.0 3 0.0 0.0 0.0 1.8120483578204734 0.0 4 0.0 0.0 0.0 4.486455015582726 0.0 5 0.0 0.0 0.0 4.855303263810405 0.0 6 0.0 0.0 0.0 6.485153601150724 0.0 7 0.0 0.0 0.0 7.803349429774992 0.0 8 0.0 0.0 0.0 8.656460837699921 0.0 9 0.0 0.0 0.0 10.763382307613275 0.0 10 0.0 0.0 0.0 12.518236925922121 0.0 11 0.0 0.0 0.0 15.344018630775027 0.0 12 0.0 0.0 0.0 16.270762697352648 0.0 13 0.0 0.0 0.0 16.694749820199323 0.0 14 0.0 0.0 0.0 17.22148018767766 0.0 15 0.0 0.0 0.0 17.556080687694784 0.0 16 0.0 0.0 0.0 18.131100380150006 0.0 17 0.0 0.0 0.0 18.770163361758964 0.0 18 0.0 0.0 0.0 19.74142950101031 0.0 19 0.0 0.0 0.0 20.11472995650536 0.0 20 0.0 0.0 0.0 20.490085276893044 0.0 21 0.0 0.0 0.0 20.899688345491285 0.0 22 0.0 0.0 0.0 21.279153395664235 0.0 23 0.0 0.0 0.0 21.704852905921435 0.0 24 0.0 0.0 0.0 21.976095071749032 0.0 25 0.0 0.0 0.0 22.22336381382924 0.0 26 0.0 0.0 0.0 22.443234357341005 0.0 27 0.0 0.0 0.0 22.700092468920168 0.0 28 0.0 0.0 0.0 22.940511661358265 0.0 29 0.0 0.0 0.0 23.20421932257954 0.0 30 0.0 0.0 0.0 23.576492345628274 0.0 31 0.0 0.0 0.0 23.821363745333745 0.0 32 0.0 0.0 0.0 24.060755505325524 0.0 33 0.0 0.0 0.0 24.307339292441522 0.0 34 0.0 0.0 0.0 24.57378677351964 0.0 35 0.0 0.0 3.4247748210555155E-4 24.85393335388198 0.0 36 0.0 0.0 3.4247748210555155E-4 25.07277646494743 0.0 37 0.0 0.0 3.4247748210555155E-4 25.29983903558341 0.0 38 0.0 0.0 3.4247748210555155E-4 25.55703962464468 0.0 39 0.0 0.0 3.4247748210555155E-4 25.821432240830166 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCATAT 30 2.1599208E-6 45.000004 31 GCTAATG 30 2.1599208E-6 45.000004 1 TGCGTAG 30 2.1599208E-6 45.000004 1 TGATCGG 25 3.8836348E-5 45.0 2 CTATGTG 20 7.024633E-4 45.0 13 TAATAGT 20 7.024633E-4 45.0 42 GCCCACA 20 7.024633E-4 45.0 27 AAATCCG 25 3.8836348E-5 45.0 1 CAAGTTT 20 7.024633E-4 45.0 11 TGCCAGT 20 7.024633E-4 45.0 24 CAAAACG 20 7.024633E-4 45.0 1 CGCGGAT 20 7.024633E-4 45.0 23 GCGGTCA 20 7.024633E-4 45.0 40 CGTGCCC 25 3.8836348E-5 45.0 24 GCAACCG 20 7.024633E-4 45.0 1 TAGGTGC 20 7.024633E-4 45.0 21 TAAACGG 45 3.8198777E-10 45.0 2 GGATCAC 35 1.2077726E-7 45.0 8 TGACGTT 20 7.024633E-4 45.0 25 CACGACC 35 1.2077726E-7 45.0 27 >>END_MODULE