SRR3548797_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548797_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	384932
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	3123	0.8113121278563485	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2781	0.7224652665925411	No Hit
AATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	1571	0.4081240322966135	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCC	1299	0.33746220111604125	No Hit
AAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	1173	0.3047291469662174	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGT	1110	0.28836261989130546	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT	947	0.2460174784117714	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	658	0.17093928278241352	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	585	0.1519748942670394	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT	578	0.15015639125871583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGCGG	60	0.0	45.000004	2
TCGCAGG	30	2.1617252E-6	45.000004	2
CAAACCG	30	2.1617252E-6	45.000004	1
CTACTAG	30	2.1617252E-6	45.000004	1
GTGGCCG	30	2.1617252E-6	45.000004	41
AGTGCGC	60	0.0	45.000004	13
TTACGCG	30	2.1617252E-6	45.000004	1
CTTAGCG	30	2.1617252E-6	45.000004	1
GATTACG	30	2.1617252E-6	45.000004	1
TGCAACG	30	2.1617252E-6	45.000004	1
TATCCGG	60	0.0	45.000004	2
ACGCGAG	25	3.885955E-5	45.0	1
AGCGTGT	20	7.027435E-4	45.0	11
CCTTAGT	20	7.027435E-4	45.0	15
TACCCTA	20	7.027435E-4	45.0	24
CGAACGG	35	1.2091186E-7	45.0	2
CGAGTTA	20	7.027435E-4	45.0	42
CTCAACG	20	7.027435E-4	45.0	1
GATCGAA	20	7.027435E-4	45.0	9
GAAGACG	20	7.027435E-4	45.0	1