SRR3548795_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548795_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	461966
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT	2708	0.5861903256949645	TruSeq Adapter, Index 22 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2703	0.5851079949606681	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCC	2490	0.5390007056796388	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT	2315	0.5011191299792626	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGT	1879	0.40673988994861093	No Hit
AAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT	1065	0.23053644640514667	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTT	950	0.20564283951632806	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	600	0.1298796881155756	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCT	532	0.1151599901291437	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	518	0.1121294640731136	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTT	508	0.10996480260452067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCG	20	7.0289E-4	45.000004	31
CAGCGAT	20	7.0289E-4	45.000004	21
AATCCCG	20	7.0289E-4	45.000004	1
GGTACCG	20	7.0289E-4	45.000004	1
TCCGCCA	20	7.0289E-4	45.000004	35
GGTCGGT	20	7.0289E-4	45.000004	42
CTCCGCG	20	7.0289E-4	45.000004	1
GGTCGAT	20	7.0289E-4	45.000004	35
ACGCACG	20	7.0289E-4	45.000004	1
TAGCGAA	20	7.0289E-4	45.000004	38
ATAGCCC	20	7.0289E-4	45.000004	35
CCAGCGT	20	7.0289E-4	45.000004	36
CATCTAC	20	7.0289E-4	45.000004	14
TAACGCG	20	7.0289E-4	45.000004	1
ACTTACG	20	7.0289E-4	45.000004	1
GCCGCTA	20	7.0289E-4	45.000004	16
GCCGATT	20	7.0289E-4	45.000004	17
AGGCCGC	20	7.0289E-4	45.000004	14
CTACGTA	20	7.0289E-4	45.000004	33
ATATACG	20	7.0289E-4	45.000004	1