SRR3548794_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548794_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	479890
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	3910	0.8147700514701286	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3605	0.7512138198337119	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	2703	0.5632540790597845	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGT	2585	0.5386651107545479	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	2543	0.5299131050865823	No Hit
AAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	1845	0.3844631061284878	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	1431	0.2981933359728271	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	947	0.19733688970389046	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	757	0.15774448311071287	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	687	0.1431578069974369	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	577	0.12023588739086041	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	567	0.11815207651753527	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	550	0.11460959803288252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCC	25	3.887397E-5	45.0	27
GTTGACC	40	6.8012014E-9	45.0	17
CGTGGTA	25	3.887397E-5	45.0	31
GTGCAAC	25	3.887397E-5	45.0	39
TCGTTAA	20	7.029176E-4	45.0	25
GTACCCA	25	3.887397E-5	45.0	33
CAAACCT	20	7.029176E-4	45.0	42
CATATGG	20	7.029176E-4	45.0	2
CATATCG	20	7.029176E-4	45.0	1
GGTAATC	20	7.029176E-4	45.0	8
CTCGTAG	25	3.887397E-5	45.0	1
TTCAGGT	25	3.887397E-5	45.0	32
CGAAATG	25	3.887397E-5	45.0	1
GTACAAC	20	7.029176E-4	45.0	12
TACCAGT	35	1.2099554E-7	45.0	13
CGAGTAT	20	7.029176E-4	45.0	33
TACCACG	40	6.8012014E-9	45.0	1
TTTACGG	40	6.8012014E-9	45.0	2
CGAAACT	20	7.029176E-4	45.0	14
CGAAACG	25	3.887397E-5	45.0	1