SRR3548793_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548793_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	487029
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3824	0.7851688503148683	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	3740	0.7679214174104623	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	2651	0.5443207693997688	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGT	2440	0.5009968605565582	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	2407	0.494221083344113	No Hit
AAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	1681	0.3451539846703174	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	1225	0.25152506318925566	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	955	0.19608688599652177	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	795	0.16323463284527207	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	678	0.1392114227284207	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	535	0.10984972147449125	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	499	0.10245796451546006	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	20	7.029277E-4	45.000004	42
TACCACC	20	7.029277E-4	45.000004	33
CTATCGA	20	7.029277E-4	45.000004	1
CGGCCTA	20	7.029277E-4	45.000004	45
ATCAGTA	20	7.029277E-4	45.000004	45
CGGCATG	20	7.029277E-4	45.000004	37
CGGTTCG	20	7.029277E-4	45.000004	30
TAGAACG	20	7.029277E-4	45.000004	14
ATTACGC	20	7.029277E-4	45.000004	16
TAGCGCG	40	6.8012014E-9	45.000004	1
TAGCGCA	20	7.029277E-4	45.000004	24
GGCAACC	20	7.029277E-4	45.000004	27
TTCACGA	20	7.029277E-4	45.000004	23
GCAAACG	80	0.0	45.000004	1
CGCGCGA	20	7.029277E-4	45.000004	14
CCCAGAC	45	3.8380676E-10	45.000004	21
GTCTAGT	20	7.029277E-4	45.000004	26
CAATTGG	40	6.8012014E-9	45.000004	2
CAATTCA	20	7.029277E-4	45.000004	44
ACTTATG	20	7.029277E-4	45.000004	1