SRR3548791_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548791_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1085618
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	36144	3.3293478921683315	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC	32273	2.972776796257984	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGT	28186	2.5963091990000167	No Hit
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	10785	0.993443365898502	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT	7228	0.6657958876879344	No Hit
AACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTG	6300	0.5803146226389024	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCT	5864	0.5401531662150039	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3822	0.35205753773426746	No Hit
AATGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTC	3372	0.3106064932600602	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGATCATCGTAT	3250	0.29936865453594175	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1761	0.16221175404239796	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGATCATC	1293	0.11910266778922236	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	1292	0.11901055435705746	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	20	7.0331123E-4	45.000004	42
ACCGGAT	20	7.0331123E-4	45.000004	4
GTCGAGA	20	7.0331123E-4	45.000004	12
GATCGCG	20	7.0331123E-4	45.000004	21
GCGTTAG	20	7.0331123E-4	45.000004	1
CGTTCAC	20	7.0331123E-4	45.000004	21
ATCGTAC	20	7.0331123E-4	45.000004	28
TGTTGCG	20	7.0331123E-4	45.000004	1
ACGATTG	20	7.0331123E-4	45.000004	1
TACGACT	20	7.0331123E-4	45.000004	14
TTGCGAT	20	7.0331123E-4	45.000004	24
CGTACTC	20	7.0331123E-4	45.000004	30
ATGCGTC	20	7.0331123E-4	45.000004	34
TTACGTC	20	7.0331123E-4	45.000004	20
ATACCCG	40	6.8139343E-9	45.000004	1
TAGTACG	20	7.0331123E-4	45.000004	1
CGAACTA	25	3.8906634E-5	45.0	1
CGACGGT	25	3.8906634E-5	45.0	28
ACGTTGT	25	3.8906634E-5	45.0	17
TTCGTAC	25	3.8906634E-5	45.0	33