SRR3548787_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548787_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	605452
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC	14306	2.3628627868105148	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGT	12077	1.9947080858598205	No Hit
AATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT	12024	1.9859542953033438	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	5512	0.9103942178735885	TruSeq Adapter, Index 16 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4199	0.6935314442763423	No Hit
AATGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT	2859	0.47220919247107945	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT	2373	0.3919385847267826	No Hit
AAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT	1930	0.31877010894340096	No Hit
AACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTG	1769	0.2921784055548582	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTAT	1485	0.24527130144090695	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT	1428	0.2358568474462055	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1058	0.17474547941042395	No Hit
AATGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	874	0.14435496125208935	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	824	0.13609666827428105	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT	745	0.12304856536934389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	55	1.8189894E-12	45.000004	6
AATCCGA	25	3.8886104E-5	45.000004	2
CCCCTAG	25	3.8886104E-5	45.000004	32
AATTTCG	25	3.8886104E-5	45.000004	37
CACGGAG	25	3.8886104E-5	45.000004	4
CTATCAT	25	3.8886104E-5	45.000004	34
TATGCGT	25	3.8886104E-5	45.000004	41
ATCGTTC	25	3.8886104E-5	45.000004	41
ATCGTGC	25	3.8886104E-5	45.000004	29
ATCCGGC	50	2.1827873E-11	45.000004	5
ATATACG	50	2.1827873E-11	45.000004	1
GTATGCG	25	3.8886104E-5	45.000004	40
TACTGCC	25	3.8886104E-5	45.000004	38
TTGGTAC	25	3.8886104E-5	45.000004	44
CAAGCGT	25	3.8886104E-5	45.000004	17
GCCTAAA	25	3.8886104E-5	45.000004	14
TAGATTA	25	3.8886104E-5	45.000004	29
TATAGCC	25	3.8886104E-5	45.000004	34
GCAATTT	25	3.8886104E-5	45.000004	35
CGGTCCG	25	3.8886104E-5	45.000004	29