##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548787_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 605452 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.09133341701737 31.0 31.0 34.0 28.0 34.0 2 31.30043174355688 31.0 31.0 34.0 28.0 34.0 3 31.255075546864163 31.0 31.0 34.0 28.0 34.0 4 35.240161069746236 37.0 35.0 37.0 33.0 37.0 5 34.86531219650773 35.0 35.0 37.0 32.0 37.0 6 34.91660115087571 35.0 35.0 37.0 32.0 37.0 7 34.773542741621135 35.0 35.0 37.0 32.0 37.0 8 35.18164610902268 37.0 35.0 37.0 32.0 37.0 9 35.714913816454484 39.0 35.0 39.0 32.0 39.0 10 35.61049265672588 37.0 35.0 39.0 30.0 39.0 11 36.016812232844224 37.0 35.0 39.0 31.0 39.0 12 35.60023916016464 37.0 35.0 39.0 30.0 39.0 13 35.42018194671089 37.0 35.0 39.0 30.0 39.0 14 36.31944563730899 38.0 35.0 40.0 31.0 41.0 15 36.496556291828256 38.0 35.0 40.0 31.0 41.0 16 36.45447037915475 38.0 35.0 40.0 31.0 41.0 17 36.435520900087866 38.0 35.0 40.0 31.0 41.0 18 36.17338120941049 38.0 35.0 40.0 30.0 41.0 19 36.17452250550002 38.0 34.0 40.0 30.0 41.0 20 36.22344132978337 38.0 34.0 40.0 30.0 41.0 21 36.30300833096596 38.0 35.0 40.0 31.0 41.0 22 36.26263023328026 38.0 34.0 40.0 30.0 41.0 23 36.21828319998943 38.0 35.0 40.0 31.0 41.0 24 35.79827302577248 38.0 34.0 40.0 29.0 41.0 25 35.86729914179819 38.0 34.0 40.0 30.0 41.0 26 35.7557312553266 38.0 34.0 40.0 30.0 41.0 27 35.676568910499924 38.0 34.0 40.0 29.0 41.0 28 35.51168878788079 37.0 34.0 40.0 29.0 41.0 29 35.390452091990774 37.0 34.0 40.0 28.0 41.0 30 35.387601329254835 37.0 34.0 40.0 28.0 41.0 31 35.34164888380912 37.0 34.0 40.0 28.0 41.0 32 35.25323064421292 37.0 34.0 40.0 27.0 41.0 33 35.11559132681038 37.0 34.0 40.0 27.0 41.0 34 35.049908167782085 37.0 34.0 40.0 27.0 41.0 35 34.93365122255769 37.0 34.0 40.0 26.0 41.0 36 34.960287520728315 37.0 34.0 40.0 26.0 41.0 37 34.71020989277432 37.0 33.0 40.0 25.0 41.0 38 34.65845186736521 37.0 33.0 40.0 25.0 41.0 39 34.422750275826985 37.0 33.0 40.0 24.0 41.0 40 34.15611642211108 36.0 33.0 40.0 23.0 41.0 41 34.21734175458996 36.0 33.0 40.0 24.0 41.0 42 34.151582619266264 36.0 33.0 40.0 23.0 41.0 43 34.139563499666366 36.0 33.0 40.0 24.0 41.0 44 34.03679730185052 36.0 33.0 40.0 23.0 41.0 45 33.68362644767876 36.0 33.0 39.0 23.0 41.0 46 33.52753480044661 35.0 32.0 39.0 22.0 41.0 47 33.26799647205724 35.0 32.0 39.0 22.0 40.0 48 33.1992048915521 35.0 32.0 39.0 21.0 40.0 49 33.08008892529878 35.0 32.0 39.0 20.0 40.0 50 32.88344245291121 35.0 32.0 39.0 20.0 40.0 51 30.93208875352629 34.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 5.0 11 6.0 12 6.0 13 15.0 14 26.0 15 65.0 16 134.0 17 269.0 18 589.0 19 1182.0 20 1827.0 21 2765.0 22 3783.0 23 4868.0 24 6066.0 25 6749.0 26 8130.0 27 9757.0 28 11952.0 29 15187.0 30 19232.0 31 24763.0 32 31609.0 33 42029.0 34 64834.0 35 69078.0 36 60755.0 37 75756.0 38 87366.0 39 56642.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.07525617224817 40.20384770386422 18.104160197670502 23.616735926217107 2 19.44051716733944 41.14727509364904 18.519717500313813 20.8924902386977 3 18.928998500293996 31.532144579586824 26.690307406697805 22.84854951342138 4 24.934759485475315 29.879825320586935 18.037102858690698 27.148312335247056 5 15.760786982287614 39.8859034242186 19.121581892536486 25.2317277009573 6 19.891750295646887 35.42989369925279 25.02725236682677 19.651103638273554 7 71.1750890243983 14.004082900048228 8.636687962051493 6.184140113501979 8 73.89289324339502 6.587144810819025 5.896751517874249 13.623210427911708 9 69.86334176780323 12.04505063985254 11.173140067255538 6.918467525088694 10 41.393702556106845 27.90840562092453 14.294114149428857 16.403777673539768 11 32.33617198390624 23.723763403209503 24.572055257889975 19.368009354994285 12 29.947708488864517 22.90751372528293 30.874454126834166 16.270323659018388 13 23.6928773874725 34.17116468357524 22.24800644807516 19.8879514808771 14 14.968651519856241 33.49332399595674 34.27290685306185 17.265117631125175 15 13.837430547756057 29.37408745862595 32.95620462068008 23.832277372937906 16 14.760707702675028 25.15079642977478 37.09047125123048 22.99802461631971 17 14.998546540435905 26.246176410351275 28.90022660755931 29.855050441653507 18 18.407735047534736 27.670401617304098 28.09173972503188 25.83012361012929 19 20.804456835554262 30.526779992468438 29.06060265718835 19.60816051478895 20 23.5937778717388 31.618030826556026 24.394667124726652 20.393524176978524 21 18.25578245674306 29.303396470735915 25.8383819031071 26.602439169413927 22 18.081697640770862 31.24690314013332 25.576594015710576 25.09480520338524 23 21.402357247147584 29.31264575887106 20.267007128558497 29.017989865422855 24 16.221764896308873 35.27992309877579 26.02006434861888 22.478247656296453 25 18.01761328726307 27.951183578549582 27.292667296499147 26.738535837688204 26 21.641021914206245 33.31312804318096 21.224803948124705 23.821046094488086 27 16.392381229230395 30.231628601441567 27.512337889708842 25.863652279619192 28 19.7500379881477 30.732741819334976 26.316702232381754 23.20051796013557 29 18.739883591102185 28.82177282427013 27.416706857025826 25.02163672760186 30 22.05096357762465 26.76925668756565 25.890574314726848 25.28920542008285 31 25.480467485448887 29.288531543375857 18.571909911933563 26.65909105924169 32 26.83713985584324 24.16541691166269 22.112900774958213 26.884542457535858 33 23.690895397157828 27.663629817062297 21.50046576772395 27.145009018055934 34 19.073188295686528 25.16764334744951 25.8383819031071 29.920786453756865 35 18.826925999088285 26.046325720288316 30.774528781802683 24.352219498820716 36 22.882738846349504 22.518217794309045 28.8075685603483 25.791474798993146 37 22.124132053408033 25.632254910381004 27.13014409069588 25.113468945515088 38 22.666041238611815 25.250556608946706 25.56701439585632 26.516387756585164 39 23.250067718002416 22.553067790675396 29.309672773399047 24.887191717923137 40 21.235374563136304 24.76513414771113 26.366747487827276 27.632743801325294 41 18.626910143165766 20.36263816124152 34.762623626645876 26.247828068946838 42 23.74688662354737 23.528537357214113 26.58245410040763 26.14212191883089 43 21.227116270158493 22.856972972258742 28.299353210493976 27.61655754708879 44 20.666873674543975 22.82327913690928 26.89313108223278 29.616716106313962 45 25.249895945508477 27.09430309917219 24.681395056916156 22.974405898403177 46 19.769527559575327 23.386329552136257 34.684830506794924 22.159312381493496 47 22.729795260400497 24.700884628343783 24.892146693709822 27.677173417545898 48 21.670421437207242 19.5947820801649 34.69672244868296 24.038074033944888 49 22.813534351195468 19.77316120848556 31.10601666193191 26.307287778387057 50 19.719977801708477 23.58733640321611 25.68857646848966 31.004109326585755 51 19.421523093490485 22.765471086064625 32.13153148391615 25.681474336528744 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4866.0 1 3967.5 2 3069.0 3 2173.0 4 1277.0 5 1233.5 6 1190.0 7 1305.0 8 1420.0 9 1521.0 10 1622.0 11 1786.0 12 1950.0 13 1963.5 14 1977.0 15 1970.0 16 1963.0 17 2018.5 18 2074.0 19 2026.0 20 1978.0 21 1876.5 22 1775.0 23 2112.0 24 2449.0 25 2331.5 26 2516.5 27 2819.0 28 3795.5 29 4772.0 30 5732.0 31 6692.0 32 6737.5 33 6783.0 34 8442.0 35 10101.0 36 10765.5 37 11430.0 38 13266.0 39 15102.0 40 17928.5 41 20755.0 42 29149.5 43 37544.0 44 59479.5 45 81415.0 46 79785.5 47 78156.0 48 69930.5 49 61705.0 50 55428.5 51 49152.0 52 44249.0 53 39346.0 54 35172.5 55 30999.0 56 27558.0 57 24117.0 58 22799.0 59 21481.0 60 20408.5 61 19336.0 62 17430.5 63 15525.0 64 13760.5 65 11996.0 66 10092.0 67 8188.0 68 7002.5 69 5817.0 70 4704.0 71 3591.0 72 2952.0 73 2313.0 74 2658.0 75 2334.5 76 1666.0 77 1253.0 78 840.0 79 650.0 80 460.0 81 358.5 82 257.0 83 199.5 84 142.0 85 98.5 86 55.0 87 45.0 88 35.0 89 26.0 90 17.0 91 12.0 92 7.0 93 4.0 94 1.0 95 1.0 96 1.0 97 3.0 98 5.0 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 605452.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.63018267602347 #Duplication Level Percentage of deduplicated Percentage of total 1 79.41643370302361 21.942905706928496 2 9.135602664555615 5.048367409544769 3 3.3808332689821516 2.802391224574633 4 1.6690282983420492 1.844622270985737 5 0.975984967727279 1.3483321473678798 6 0.6466524179329403 1.0720274661227647 7 0.384896751725553 0.7444337293109557 8 0.27297283674868517 0.6033831475966803 9 0.23230168573472376 0.5776684211518752 >10 2.425140701171385 16.17973665786065 >50 1.0050948214004134 20.092417748556166 >100 0.44423748386058937 16.934468350744325 >500 0.0036067995983268424 0.6741764374753202 >1k 0.004809066131102457 2.840377249880623 >5k 6.011332663878071E-4 0.91551133859669 >10k+ 0.0018033997991634212 6.379180693302445 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC 14306 2.3628627868105148 No Hit AATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGT 12077 1.9947080858598205 No Hit AATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT 12024 1.9859542953033438 No Hit CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT 5512 0.9103942178735885 TruSeq Adapter, Index 16 (95% over 22bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4199 0.6935314442763423 No Hit AATGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT 2859 0.47220919247107945 No Hit AATGATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT 2373 0.3919385847267826 No Hit AAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT 1930 0.31877010894340096 No Hit AACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTG 1769 0.2921784055548582 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTAT 1485 0.24527130144090695 No Hit AAAAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT 1428 0.2358568474462055 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1058 0.17474547941042395 No Hit AATGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC 874 0.14435496125208935 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 824 0.13609666827428105 No Hit AAAAAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT 745 0.12304856536934389 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.261206503570886 0.0 2 0.0 0.0 0.0 1.5352166645745657 0.0 3 0.0 0.0 0.0 2.2550094805203384 0.0 4 0.0 0.0 0.0 6.282413799937897 0.0 5 0.0 0.0 0.0 6.7699834173477 0.0 6 0.0 0.0 0.0 8.783024913618256 0.0 7 0.0 0.0 0.0 10.390584224678422 0.0 8 0.0 0.0 0.0 11.287434842068405 0.0 9 0.0 0.0 0.0 14.70884562277439 0.0 10 0.0 0.0 0.0 16.48124046167161 0.0 11 0.0 0.0 0.0 20.731123193911326 0.0 12 0.0 0.0 0.0 21.685451530426853 0.0 13 0.0 0.0 0.0 22.22124957882706 0.0 14 0.0 0.0 0.0 22.89760377370956 0.0 15 0.0 0.0 0.0 23.23008264899612 0.0 16 0.0 0.0 0.0 23.78470960538573 0.0 17 0.0 0.0 0.0 24.380958358383488 0.0 18 0.0 0.0 0.0 25.394085740901012 0.0 19 0.0 0.0 0.0 25.714507508439976 0.0 20 0.0 0.0 0.0 26.07027476992396 0.0 21 0.0 0.0 0.0 26.398624498721617 0.0 22 0.0 0.0 0.0 26.725322568923712 0.0 23 0.0 0.0 0.0 27.051855473266254 0.0 24 0.0 0.0 0.0 27.269874407880394 0.0 25 0.0 0.0 0.0 27.457337658476643 0.0 26 1.651658595561663E-4 0.0 0.0 27.648930055561795 0.0 27 1.651658595561663E-4 0.0 0.0 27.87933642964265 0.0 28 1.651658595561663E-4 0.0 0.0 28.073406314621142 0.0 29 1.651658595561663E-4 0.0 0.0 28.287130936886822 0.0 30 1.651658595561663E-4 0.0 0.0 28.66205743807932 0.0 31 1.651658595561663E-4 0.0 0.0 28.86884509424364 0.0 32 1.651658595561663E-4 0.0 0.0 29.06175881820524 0.0 33 1.651658595561663E-4 0.0 0.0 29.257150030060185 0.0 34 1.651658595561663E-4 0.0 0.0 29.437841480414633 0.0 35 1.651658595561663E-4 0.0 0.0 29.6659355324617 0.0 36 1.651658595561663E-4 0.0 0.0 29.8588492564233 0.0 37 1.651658595561663E-4 0.0 0.0 30.04548667772177 0.0 38 1.651658595561663E-4 0.0 0.0 30.255412485217654 0.0 39 1.651658595561663E-4 0.0 0.0 30.458731658331295 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 55 1.8189894E-12 45.000004 6 AATCCGA 25 3.8886104E-5 45.000004 2 CCCCTAG 25 3.8886104E-5 45.000004 32 AATTTCG 25 3.8886104E-5 45.000004 37 CACGGAG 25 3.8886104E-5 45.000004 4 CTATCAT 25 3.8886104E-5 45.000004 34 TATGCGT 25 3.8886104E-5 45.000004 41 ATCGTTC 25 3.8886104E-5 45.000004 41 ATCGTGC 25 3.8886104E-5 45.000004 29 ATCCGGC 50 2.1827873E-11 45.000004 5 ATATACG 50 2.1827873E-11 45.000004 1 GTATGCG 25 3.8886104E-5 45.000004 40 TACTGCC 25 3.8886104E-5 45.000004 38 TTGGTAC 25 3.8886104E-5 45.000004 44 CAAGCGT 25 3.8886104E-5 45.000004 17 GCCTAAA 25 3.8886104E-5 45.000004 14 TAGATTA 25 3.8886104E-5 45.000004 29 TATAGCC 25 3.8886104E-5 45.000004 34 GCAATTT 25 3.8886104E-5 45.000004 35 CGGTCCG 25 3.8886104E-5 45.000004 29 >>END_MODULE