SRR3548785_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548785_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	301517
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT	3108	1.0307876504475701	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2939	0.9747377428138381	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCC	2217	0.7352819244022725	No Hit
AATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCT	2185	0.7246689241402641	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGT	1826	0.6056043274508568	No Hit
AAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCT	1288	0.42717326054583993	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTT	911	0.30213885120905287	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	691	0.22917447440774483	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	554	0.18373756703602118	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	544	0.18042100445414355	No Hit
AATGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTC	503	0.1668230978684452	No Hit
AATGACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTT	477	0.15820003515556336	No Hit
AACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTG	460	0.1525618787663714	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	416	0.13796900340610976	No Hit
CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	355	0.11773797165665618	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	339	0.11243147152565196	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	334	0.11077319023471313	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	302	0.10016018997270469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	35	1.2079363E-7	45.000004	4
CGGCACG	35	1.2079363E-7	45.000004	1
GTAGCGG	35	1.2079363E-7	45.000004	2
ACTAATA	35	1.2079363E-7	45.000004	27
TTAACGG	35	1.2079363E-7	45.000004	2
CATAACG	35	1.2079363E-7	45.000004	1
GCGAGAC	20	7.025E-4	45.0	21
CTTAACG	25	3.8839382E-5	45.0	1
TGTTTCG	25	3.8839382E-5	45.0	16
CGGGTGC	25	3.8839382E-5	45.0	6
CGGGTAT	20	7.025E-4	45.0	6
ATGGGAC	50	2.1827873E-11	45.0	5
CGGAACG	20	7.025E-4	45.0	1
GCCCAAA	20	7.025E-4	45.0	19
GATGTCA	20	7.025E-4	45.0	9
TCACCCT	20	7.025E-4	45.0	14
ATTAGCC	20	7.025E-4	45.0	31
GTTTCGT	25	3.8839382E-5	45.0	17
TACCACG	20	7.025E-4	45.0	1
CGGCCTA	20	7.025E-4	45.0	45