SRR3548779_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548779_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533079
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	7312	1.3716541075525392	No Hit
AATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	6630	1.243718098068016	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGT	6167	1.1568641796056494	No Hit
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	5597	1.04993818927401	Illumina Single End Adapter 2 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4873	0.9141234226071557	No Hit
AAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	2008	0.3766796290981262	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT	1580	0.29639134162103553	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT	1457	0.2733178384442081	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT	1414	0.26525149180515456	No Hit
AACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	1257	0.2357999470997732	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1166	0.21872930653805533	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	903	0.16939327942012347	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT	872	0.16357800626173605	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTAT	768	0.14406870276262992	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	650	0.12193314686941335	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT	596	0.11180331620641594	No Hit
ATGAATAAATTGGCCCTGAGGACATTTTCAAACTTCCTTTAAGTCACATAT	550	0.10317420119719592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	35	1.2102828E-7	45.000004	1
ACAACGC	35	1.2102828E-7	45.000004	31
GGGTCTA	35	1.2102828E-7	45.000004	7
TAGAACG	35	1.2102828E-7	45.000004	1
TATTGCG	35	1.2102828E-7	45.000004	1
CTGCCTA	35	1.2102828E-7	45.000004	20
TGTTACC	35	1.2102828E-7	45.000004	11
CATACCG	35	1.2102828E-7	45.000004	1
GCTACGT	35	1.2102828E-7	45.000004	1
CCTATGA	35	1.2102828E-7	45.000004	23
TATCGCG	35	1.2102828E-7	45.000004	1
GCGTAAG	35	1.2102828E-7	45.000004	1
CTTAACA	25	3.8879814E-5	45.0	27
AGCGTTC	20	7.0298783E-4	45.0	17
CTAGAAA	20	7.0298783E-4	45.0	26
AGGTACC	20	7.0298783E-4	45.0	41
CTCACTA	45	3.8380676E-10	45.0	44
ACTATAG	25	3.8879814E-5	45.0	1
TCGTTAA	20	7.0298783E-4	45.0	44
GTACCGT	20	7.0298783E-4	45.0	22