SRR3548776_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548776_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	645989
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC	12351	1.9119520611032077	No Hit
AATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	11855	1.835170567919887	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGT	11518	1.7830024969465423	No Hit
CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT	5888	0.9114706287568364	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2714	0.42013099294260425	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTT	2609	0.40387684620016745	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	2223	0.3441235067470189	No Hit
AACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTG	1872	0.2897882162080159	No Hit
AAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	1361	0.2106847020614902	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTAT	1286	0.19907459724546392	No Hit
AATGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	978	0.15139576680098268	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTT	907	0.14040486757514448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	25	3.888901E-5	45.000004	1
CTATACG	25	3.888901E-5	45.000004	1
TAGCGGA	25	3.888901E-5	45.000004	3
ATATCGC	25	3.888901E-5	45.000004	14
ACGTGAC	25	3.888901E-5	45.000004	35
TCGTCAG	25	3.888901E-5	45.000004	29
AGTCTCG	25	3.888901E-5	45.000004	30
CATACCG	25	3.888901E-5	45.000004	1
GGCGATA	25	3.888901E-5	45.000004	45
CGATCCG	25	3.888901E-5	45.000004	1
CGTCAGT	25	3.888901E-5	45.000004	30
TATCGCC	25	3.888901E-5	45.000004	15
TGAGACG	25	3.888901E-5	45.000004	1
TCGCGCG	25	3.888901E-5	45.000004	1
CGGGTAT	40	6.8066583E-9	45.0	6
CCGGGTA	20	7.0309895E-4	45.0	5
TCCGCAG	20	7.0309895E-4	45.0	1
CGCGGTA	20	7.0309895E-4	45.0	4
ACGCATT	20	7.0309895E-4	45.0	23
ACGTTGC	20	7.0309895E-4	45.0	19