SRR3548770_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548770_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449318
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	5321	1.1842392247806677	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCC	5298	1.1791203557391425	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGT	4493	0.9999599392857619	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT	3862	0.8595248799291371	TruSeq Adapter, Index 16 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2836	0.6311788087724062	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	1269	0.2824280353780619	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT	1113	0.24770874970510862	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT	988	0.21988880926203713	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT	875	0.1947395831015005	No Hit
AACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	804	0.17893785692983588	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	669	0.14889232125131865	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	604	0.1344259522209215	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTAT	573	0.12752660699103974	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	515	0.11461815462545458	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT	477	0.10616089273076085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	30	2.1625383E-6	45.000004	35
CGGGTAT	35	1.2097189E-7	45.000004	6
CAACGAA	35	1.2097189E-7	45.000004	5
TAACGTT	30	2.1625383E-6	45.000004	34
CGATTGG	45	3.8380676E-10	45.000004	2
ACGGGTA	75	0.0	45.000004	5
CGTTACT	30	2.1625383E-6	45.000004	27
CCATAGG	45	3.8380676E-10	45.000004	2
AGCGCGT	30	2.1625383E-6	45.000004	22
CGAATAT	45	3.8380676E-10	45.000004	13
GACGGGT	30	2.1625383E-6	45.000004	4
TTAACCG	30	2.1625383E-6	45.000004	1
TCGTAAG	30	2.1625383E-6	45.000004	1
TCCAACG	30	2.1625383E-6	45.000004	1
CGAGCGT	30	2.1625383E-6	45.000004	40
ACCACTA	30	2.1625383E-6	45.000004	10
ACGTAGG	35	1.2097189E-7	45.000004	2
CGCACGG	35	1.2097189E-7	45.000004	2
CGCGTTA	30	2.1625383E-6	45.000004	25
ACTTTCG	30	2.1625383E-6	45.000004	28