##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548770_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 449318 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.37389999955488 31.0 31.0 34.0 30.0 34.0 2 31.530065566035635 31.0 31.0 34.0 30.0 34.0 3 31.734622249720687 31.0 31.0 34.0 30.0 34.0 4 35.54939040946501 37.0 35.0 37.0 33.0 37.0 5 35.14968463315514 37.0 35.0 37.0 32.0 37.0 6 35.169948677773874 37.0 35.0 37.0 32.0 37.0 7 35.125975367111934 37.0 35.0 37.0 32.0 37.0 8 35.46146381849826 37.0 35.0 37.0 33.0 37.0 9 36.34813650910936 39.0 37.0 39.0 32.0 39.0 10 36.05836400945433 38.0 35.0 39.0 31.0 39.0 11 36.29084746215376 38.0 35.0 39.0 32.0 39.0 12 35.825718088302715 37.0 35.0 39.0 31.0 39.0 13 35.5415474118553 37.0 35.0 39.0 30.0 39.0 14 36.521730711878895 38.0 35.0 40.0 31.0 41.0 15 36.61056534570171 38.0 35.0 40.0 31.0 41.0 16 36.62053156116603 38.0 35.0 40.0 31.0 41.0 17 36.59961541714331 38.0 35.0 40.0 31.0 41.0 18 36.4209802411655 38.0 35.0 40.0 31.0 41.0 19 36.428972353655986 38.0 35.0 40.0 31.0 41.0 20 36.43548889650537 38.0 35.0 40.0 31.0 41.0 21 36.489989272630964 38.0 35.0 40.0 31.0 41.0 22 36.45900453576309 38.0 35.0 40.0 31.0 41.0 23 36.39784517869304 38.0 35.0 40.0 31.0 41.0 24 36.07253659991365 38.0 34.0 40.0 30.0 41.0 25 36.1535438152934 38.0 35.0 40.0 30.0 41.0 26 36.044912511851294 38.0 35.0 40.0 30.0 41.0 27 35.909286963798465 38.0 34.0 40.0 30.0 41.0 28 35.86396494242385 38.0 34.0 40.0 30.0 41.0 29 35.65451640041129 38.0 34.0 40.0 29.0 41.0 30 35.514862524982306 37.0 34.0 40.0 29.0 41.0 31 35.36084243230852 37.0 34.0 40.0 28.0 41.0 32 35.28907588834634 37.0 34.0 40.0 28.0 41.0 33 35.251901771128686 37.0 34.0 40.0 28.0 41.0 34 35.214068877721346 37.0 34.0 40.0 27.0 41.0 35 34.98124936014137 37.0 34.0 40.0 27.0 41.0 36 34.849115771012954 37.0 33.0 40.0 26.0 41.0 37 34.5435437707815 37.0 33.0 40.0 25.0 41.0 38 34.57925344633422 37.0 33.0 40.0 25.0 41.0 39 34.6521750742236 37.0 33.0 40.0 25.0 41.0 40 34.49968173988133 37.0 33.0 40.0 24.0 41.0 41 34.60468977428013 37.0 33.0 40.0 25.0 41.0 42 34.51352271665057 36.0 33.0 40.0 25.0 41.0 43 34.41911741795343 36.0 33.0 40.0 25.0 41.0 44 34.193735839650316 36.0 33.0 40.0 24.0 41.0 45 33.92046612866611 36.0 33.0 39.0 23.0 41.0 46 33.842289870425844 35.0 33.0 39.0 23.0 41.0 47 33.71558895926716 35.0 33.0 39.0 23.0 41.0 48 33.68154848014101 35.0 33.0 39.0 23.0 41.0 49 33.52966718448849 35.0 32.0 39.0 23.0 40.0 50 33.242725641972946 35.0 32.0 39.0 22.0 40.0 51 31.163683627186092 34.0 28.0 38.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 3.0 12 7.0 13 6.0 14 19.0 15 54.0 16 79.0 17 194.0 18 394.0 19 719.0 20 1204.0 21 1804.0 22 2444.0 23 3256.0 24 3955.0 25 4637.0 26 5429.0 27 6770.0 28 8295.0 29 10385.0 30 13168.0 31 16844.0 32 21714.0 33 29649.0 34 48892.0 35 50982.0 36 43469.0 37 55712.0 38 69038.0 39 50190.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.252471523508962 35.832750969246725 19.278105929430826 24.636671577813487 2 21.08328622490085 36.50933192082223 20.304773011541936 22.102608842734988 3 20.324580809137405 31.229329784250798 23.935831638171628 24.51025776844017 4 22.797439675241144 31.149208355774753 18.740402120547138 27.31294984843696 5 17.089900693940592 37.18658055096836 18.220725633070565 27.502793122020485 6 20.576740749313405 35.93980210007167 22.598916580239383 20.88454057037555 7 76.38354127811483 10.446721475658665 7.489573086321936 5.6801641599045665 8 78.6353985373388 6.253477492555384 5.7333558860317195 9.377768084074086 9 73.14285205578231 10.72447576104229 10.255987963980967 5.8766842191944235 10 42.78528792525561 27.23416377710219 13.463515817305339 16.517032480336866 11 35.20023680333305 24.997218005955695 22.628294437347268 17.17425075336399 12 33.29713031750342 23.068739734441976 28.178483835501805 15.4556461125528 13 24.849883601369186 34.466012935159505 21.6737366408646 19.010366822606706 14 17.37922807454854 35.216038529504715 30.195985916433347 17.208747479513395 15 16.242839147329953 28.778504310977972 34.29286162584183 20.685794915850245 16 17.13552539626723 25.8845628263279 35.06848156539466 21.911430212010202 17 16.93633462269484 26.823318896638902 26.88941907513164 29.35092740553461 18 20.823114141877245 27.111756039152674 27.600051633809464 24.46507818516062 19 23.007980984514308 30.74704329672971 26.615225742124732 19.62974997663125 20 25.353090684103464 29.276369965147182 24.470864732772778 20.899674617976576 21 20.86673580849198 29.59974895285744 25.133201874841426 24.40031336380915 22 20.42517771377955 29.618889071882275 25.479504493476778 24.476428720861396 23 21.889174259655743 29.40634472689721 21.642355748044814 27.06212526540223 24 18.419916406642955 31.416502343551784 27.12622240818307 23.03735884162219 25 20.32880944008475 27.2047859199943 26.39823020666877 26.06817443325217 26 23.13550759150535 31.87341704538879 22.128648306989703 22.862427056116157 27 18.655829501600202 28.9699055012263 28.07121014515332 24.30305485202017 28 23.138178305787882 28.68992562060723 27.900729550118182 20.271166523486706 29 23.03646860352801 29.222733119972936 27.08860984870404 20.65218842779501 30 23.99124895953423 26.643268242091345 26.313657587721835 23.051825210652588 31 29.48913686965579 30.48019442799977 19.72367009556706 20.306998606777384 32 29.80850978594225 26.95440645600666 21.706230331302105 21.530853426748983 33 26.639707289714632 27.6496824075599 21.97129872384369 23.73931157888177 34 24.15304973315113 26.762115027664144 25.954891635767986 23.129943603416734 35 25.478169136335516 27.168286158132993 25.175043065267804 22.17850164026369 36 26.973101455984406 25.82602967163568 28.62716383496766 18.573705037412257 37 22.80567437761229 29.771342345510305 25.948437409585196 21.474545867292207 38 24.560778780284785 30.14680026173 23.56638282908764 21.726038128897574 39 24.490672530368247 25.53981812435736 27.34700145553928 22.62250788973511 40 23.05627640112348 28.51566151367183 23.079422591572115 25.348639493632575 41 19.69451479798272 22.843732056138414 31.723189366996202 25.73856377888266 42 27.045210741612845 26.497714313693198 22.908941996536974 23.548132948156987 43 23.457106103027257 23.911350090581728 27.227264431872307 25.404279374518712 44 22.9140608655785 25.099150267739105 25.209984910464307 26.776803956218092 45 25.192402708104282 28.26528204968419 23.58685830525374 22.955456936957788 46 21.489902474416784 25.721426695569733 31.019011034501176 21.76965979551231 47 22.6209499730703 27.011826813081157 24.466413542301886 25.900809671546654 48 22.89848169893038 22.324055568661837 32.49903186607258 22.278430866335203 49 23.04114235352245 21.923670985805156 29.380082703118948 25.65510395755345 50 19.9700434881309 24.703216875353313 26.39355645667434 28.93318317984145 51 20.203953547376248 24.91932217271509 30.068681868965857 24.808042410942807 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3279.0 1 2588.0 2 1897.0 3 1286.5 4 676.0 5 663.0 6 650.0 7 683.5 8 717.0 9 713.5 10 710.0 11 776.0 12 842.0 13 900.5 14 959.0 15 1030.5 16 1102.0 17 1148.0 18 1194.0 19 1190.0 20 1186.0 21 1347.0 22 1508.0 23 1741.0 24 1974.0 25 1973.5 26 2377.5 27 2782.0 28 3099.0 29 3416.0 30 3832.0 31 4248.0 32 4964.5 33 5681.0 34 6846.5 35 8012.0 36 8998.5 37 9985.0 38 10986.0 39 11987.0 40 14654.5 41 17322.0 42 22572.5 43 27823.0 44 39962.5 45 52102.0 46 51483.0 47 50864.0 48 47767.0 49 44670.0 50 42951.5 51 41233.0 52 36706.5 53 32180.0 54 27756.0 55 23332.0 56 21775.5 57 20219.0 58 18835.0 59 17451.0 60 16426.0 61 15401.0 62 14118.0 63 12835.0 64 11102.5 65 9370.0 66 7744.0 67 6118.0 68 5286.5 69 4455.0 70 3984.5 71 3514.0 72 2785.0 73 2056.0 74 1748.5 75 1117.0 76 793.0 77 599.5 78 406.0 79 429.0 80 452.0 81 340.0 82 228.0 83 169.5 84 111.0 85 100.5 86 90.0 87 67.0 88 44.0 89 31.0 90 18.0 91 12.5 92 7.0 93 5.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 449318.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.458931436577224 #Duplication Level Percentage of deduplicated Percentage of total 1 79.52558913295773 22.632132885882548 2 8.956485079027141 5.0978398955352064 3 3.1062272898387304 2.651997284038365 4 1.432885847444971 1.6311360035551312 5 0.852153248118431 1.2125685430829505 6 0.5303100041121672 0.9055233628295491 7 0.3794733986503467 0.7559585203936607 8 0.29512513056824485 0.6719156684842065 9 0.24671371340263415 0.6319087788770036 >10 3.171343001374555 22.31618241338915 >50 1.2265334977816353 24.8980127480415 >100 0.26623037730333393 10.1024723235106 >500 0.005465139710039113 1.1171643978756773 >1k 0.003903671221456509 3.015766183843789 >5k 0.0015614684885826037 2.359420990660664 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT 5321 1.1842392247806677 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCC 5298 1.1791203557391425 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGT 4493 0.9999599392857619 No Hit CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT 3862 0.8595248799291371 TruSeq Adapter, Index 16 (95% over 22bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2836 0.6311788087724062 No Hit AAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT 1269 0.2824280353780619 No Hit AATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT 1113 0.24770874970510862 No Hit AATGATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT 988 0.21988880926203713 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT 875 0.1947395831015005 No Hit AACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG 804 0.17893785692983588 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 669 0.14889232125131865 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 604 0.1344259522209215 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTAT 573 0.12752660699103974 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 515 0.11461815462545458 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT 477 0.10616089273076085 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.22559523544572E-4 0.0 0.0 1.2084982128470259 0.0 2 2.22559523544572E-4 0.0 0.0 1.5102889267734656 0.0 3 2.22559523544572E-4 0.0 0.0 2.0566725570753897 0.0 4 2.22559523544572E-4 0.0 0.0 5.149804815297851 0.0 5 2.22559523544572E-4 0.0 0.0 5.5446254100659225 0.0 6 2.22559523544572E-4 0.0 0.0 7.212486479508945 0.0 7 2.22559523544572E-4 0.0 0.0 8.602815823091886 0.0 8 2.22559523544572E-4 0.0 0.0 9.423170226877179 0.0 9 2.22559523544572E-4 0.0 0.0 11.67903355752496 0.0 10 2.22559523544572E-4 0.0 0.0 13.420561829261237 0.0 11 2.22559523544572E-4 0.0 0.0 16.375262063838974 0.0 12 2.22559523544572E-4 0.0 0.0 17.262161765164095 0.0 13 2.22559523544572E-4 0.0 0.0 17.688363252751948 0.0 14 2.22559523544572E-4 0.0 0.0 18.188677061680146 0.0 15 2.22559523544572E-4 0.0 0.0 18.489800097035953 0.0 16 2.22559523544572E-4 0.0 0.0 19.072906048722732 0.0 17 2.22559523544572E-4 0.0 0.0 19.693402000364998 0.0 18 2.22559523544572E-4 0.0 0.0 20.700038725357096 0.0 19 2.22559523544572E-4 0.0 0.0 21.04033223685675 0.0 20 2.22559523544572E-4 0.0 0.0 21.43515283162482 0.0 21 2.22559523544572E-4 0.0 0.0 21.830195985916433 0.0 22 2.22559523544572E-4 0.0 0.0 22.201870390235868 0.0 23 2.22559523544572E-4 0.0 0.0 22.592017235009504 0.0 24 2.22559523544572E-4 0.0 0.0 22.851076520415386 0.0 25 4.45119047089144E-4 0.0 0.0 23.083651222519464 0.0 26 4.45119047089144E-4 0.0 0.0 23.30109187702251 0.0 27 4.45119047089144E-4 0.0 0.0 23.559483483857758 0.0 28 4.45119047089144E-4 0.0 0.0 23.785603959779042 0.0 29 4.45119047089144E-4 0.0 0.0 24.02240729283047 0.0 30 4.45119047089144E-4 0.0 0.0 24.40409687570941 0.0 31 6.67678570633716E-4 0.0 0.0 24.664268958733015 0.0 32 6.67678570633716E-4 0.0 0.0 24.896621101313546 0.0 33 6.67678570633716E-4 0.0 0.0 25.14366217244802 0.0 34 6.67678570633716E-4 0.0 0.0 25.383803898352614 0.0 35 6.67678570633716E-4 0.0 0.0 25.670905683725113 0.0 36 6.67678570633716E-4 0.0 0.0 25.897916397740577 0.0 37 6.67678570633716E-4 0.0 0.0 26.127597826038574 0.0 38 6.67678570633716E-4 0.0 0.0 26.362620682901643 0.0 39 6.67678570633716E-4 0.0 0.0 26.600314254047245 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 30 2.1625383E-6 45.000004 35 CGGGTAT 35 1.2097189E-7 45.000004 6 CAACGAA 35 1.2097189E-7 45.000004 5 TAACGTT 30 2.1625383E-6 45.000004 34 CGATTGG 45 3.8380676E-10 45.000004 2 ACGGGTA 75 0.0 45.000004 5 CGTTACT 30 2.1625383E-6 45.000004 27 CCATAGG 45 3.8380676E-10 45.000004 2 AGCGCGT 30 2.1625383E-6 45.000004 22 CGAATAT 45 3.8380676E-10 45.000004 13 GACGGGT 30 2.1625383E-6 45.000004 4 TTAACCG 30 2.1625383E-6 45.000004 1 TCGTAAG 30 2.1625383E-6 45.000004 1 TCCAACG 30 2.1625383E-6 45.000004 1 CGAGCGT 30 2.1625383E-6 45.000004 40 ACCACTA 30 2.1625383E-6 45.000004 10 ACGTAGG 35 1.2097189E-7 45.000004 2 CGCACGG 35 1.2097189E-7 45.000004 2 CGCGTTA 30 2.1625383E-6 45.000004 25 ACTTTCG 30 2.1625383E-6 45.000004 28 >>END_MODULE