SRR3548767_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548767_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629180
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGCT	4924	0.7826059315299277	TruSeq Adapter, Index 23 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT	4014	0.6379732350042913	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCC	3623	0.5758288566070123	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3526	0.5604119647795544	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGT	3108	0.49397628659525095	No Hit
AAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT	1524	0.24222003242315393	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT	1053	0.16736069169395085	No Hit
AATGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC	972	0.1544867923328777	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	876	0.1392288375345688	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	768	0.12206363838647127	No Hit
AATGACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT	742	0.11793127562859596	No Hit
AACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTG	720	0.11443466098731683	TruSeq Adapter, Index 22 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	685	0.10887186496710004	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCT	651	0.10346800597603231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACACG	45	3.8380676E-10	45.000004	1
ATTCACG	45	3.8380676E-10	45.000004	1
AGCCGAA	20	7.0308504E-4	45.0	42
CGTATCA	20	7.0308504E-4	45.0	29
CGAGTTA	20	7.0308504E-4	45.0	26
GTCGACT	20	7.0308504E-4	45.0	13
GATCGCT	20	7.0308504E-4	45.0	28
GGTCGAC	20	7.0308504E-4	45.0	12
CACGGAA	20	7.0308504E-4	45.0	4
TTAGCGA	25	3.8887854E-5	45.0	27
GGCACTA	25	3.8887854E-5	45.0	8
CAGCCGA	25	3.8887854E-5	45.0	15
TCCGACA	25	3.8887854E-5	45.0	18
CTATACG	40	6.8066583E-9	45.0	1
CGTTGCC	20	7.0308504E-4	45.0	19
TAGAACG	20	7.0308504E-4	45.0	1
ATTACGG	50	2.1827873E-11	45.0	2
CGCGCGA	25	3.8887854E-5	45.0	33
TACGGTA	20	7.0308504E-4	45.0	25
CGCGATC	25	3.8887854E-5	45.0	35