##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548767_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 629180 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16855430878286 31.0 31.0 34.0 28.0 34.0 2 31.362813503289996 31.0 31.0 34.0 28.0 34.0 3 31.327902984837408 31.0 31.0 34.0 28.0 34.0 4 35.34915604437522 37.0 35.0 37.0 33.0 37.0 5 35.021063924473125 37.0 35.0 37.0 32.0 37.0 6 35.08625512571919 36.0 35.0 37.0 32.0 37.0 7 35.048583871070285 37.0 35.0 37.0 32.0 37.0 8 35.419808321942845 37.0 35.0 37.0 33.0 37.0 9 35.82296640071204 39.0 37.0 39.0 32.0 39.0 10 35.56815219809911 37.0 35.0 39.0 30.0 39.0 11 36.099089290822974 38.0 35.0 39.0 31.0 39.0 12 35.84973457516132 37.0 35.0 39.0 31.0 39.0 13 35.602576369242506 37.0 35.0 39.0 30.0 39.0 14 36.573091960965066 38.0 35.0 40.0 31.0 41.0 15 36.69108681140532 38.0 35.0 40.0 31.0 41.0 16 36.705820274007436 38.0 35.0 40.0 31.0 41.0 17 36.68231348739629 38.0 35.0 40.0 31.0 41.0 18 36.48843574175911 38.0 35.0 40.0 31.0 41.0 19 36.55983661273403 38.0 35.0 40.0 31.0 41.0 20 36.47534727740869 38.0 35.0 40.0 31.0 41.0 21 36.5109253313837 38.0 35.0 40.0 31.0 41.0 22 36.43694968053657 38.0 35.0 40.0 31.0 41.0 23 36.43745351091897 38.0 35.0 40.0 31.0 41.0 24 36.05257001176134 38.0 34.0 40.0 30.0 41.0 25 36.177758352140884 38.0 35.0 40.0 30.0 41.0 26 36.03038399186242 38.0 35.0 40.0 30.0 41.0 27 35.95563908579421 38.0 34.0 40.0 30.0 41.0 28 35.70680727295846 38.0 34.0 40.0 29.0 41.0 29 35.24873327187768 38.0 34.0 40.0 27.0 41.0 30 35.30311198703074 38.0 34.0 40.0 27.0 41.0 31 35.19928160462825 37.0 34.0 40.0 27.0 41.0 32 35.256627674115514 38.0 34.0 40.0 27.0 41.0 33 35.1303696875298 37.0 34.0 40.0 27.0 41.0 34 35.164679424012206 37.0 34.0 40.0 27.0 41.0 35 35.045208048571155 37.0 34.0 40.0 27.0 41.0 36 34.84799898280301 37.0 34.0 40.0 26.0 41.0 37 34.76771671063924 37.0 33.0 40.0 25.0 41.0 38 34.705771003528405 37.0 33.0 40.0 25.0 41.0 39 34.55469341047077 37.0 33.0 40.0 25.0 41.0 40 34.37759941511173 37.0 33.0 40.0 24.0 41.0 41 34.41508789217712 37.0 33.0 40.0 24.0 41.0 42 34.41399122667599 37.0 33.0 40.0 24.0 41.0 43 34.23803680981595 37.0 33.0 40.0 24.0 41.0 44 34.265801519438 37.0 33.0 40.0 24.0 41.0 45 34.12927461139896 36.0 33.0 40.0 24.0 41.0 46 33.89957404876188 36.0 33.0 40.0 23.0 41.0 47 33.80604278584825 36.0 33.0 39.0 23.0 41.0 48 33.767510092501354 36.0 33.0 39.0 23.0 41.0 49 33.45498426523412 36.0 32.0 39.0 22.0 41.0 50 33.250112845290694 35.0 32.0 39.0 20.0 40.0 51 31.449384913697195 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 6.0 10 5.0 11 11.0 12 11.0 13 18.0 14 21.0 15 70.0 16 134.0 17 256.0 18 590.0 19 1088.0 20 1759.0 21 2810.0 22 3906.0 23 4915.0 24 5978.0 25 6899.0 26 8376.0 27 9986.0 28 11800.0 29 14938.0 30 18680.0 31 23620.0 32 30755.0 33 40696.0 34 63450.0 35 67970.0 36 62208.0 37 81214.0 38 98726.0 39 68279.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.328808925903555 34.631266092374204 20.168473250897996 25.871451730824248 2 22.747862296957948 33.62201595727773 21.237165834896214 22.392955910868114 3 21.097778060332494 31.931879589306718 21.771671063924472 25.198671286436316 4 21.597158205918817 31.802822721637686 19.431164372675546 27.16885469976795 5 18.369465017959886 36.20363012174577 18.082901554404145 27.344003305890208 6 20.203121523252488 37.42410756858133 20.59124574843447 21.781525159731714 7 80.12142789026987 8.182872945738898 6.5752248958962465 5.120474268094981 8 82.09542579230109 6.32489907498649 5.141930767030103 6.437744365682317 9 74.52795702342732 12.116882291236212 8.587844496010682 4.767316189325789 10 39.017928096888014 34.87046632124352 12.188245017324135 13.923360564544327 11 32.42649162401857 26.726056136558697 23.379795924854573 17.467656314568167 12 31.680759083251214 23.515369210718713 28.74105979211037 16.062811913919706 13 25.741441240980322 32.44413363425411 22.49864903525223 19.315776089513335 14 17.35719507930958 35.86938554944531 28.765853968657616 18.007565402587495 15 15.890206300263834 29.13236275787533 34.23598970088051 20.741441240980325 16 17.631202517562542 27.81556947137544 32.48211958422073 22.071108426841285 17 18.011697765345367 25.242061095394003 26.813312565561525 29.9329285736991 18 23.73867573667313 26.29358848024413 25.706316157538385 24.26141962554436 19 25.167042817635654 29.149845831081727 25.552147239263807 20.130964112018816 20 24.758097841635145 29.173368511395786 23.744397469722493 22.324136177246576 21 23.781906608601673 29.347086684255697 24.58787628341651 22.28313042372612 22 19.637464636511016 29.973934327219553 24.210877650274963 26.17772338599447 23 20.96141008932261 28.065418481197753 22.526780889411615 28.446390540068023 24 17.558568295241425 29.933723258844847 27.512794430846498 24.99491401506723 25 19.421469213897456 27.42410756858133 25.4853936870212 27.669029530500016 26 20.867319368066372 32.11147843224514 21.903906672176486 25.117295527512002 27 18.143774436568233 29.32324612988334 26.28309863632029 26.249880797228137 28 21.450141453955943 27.64868559076894 27.704154613941956 23.197018341333163 29 20.055786897231318 29.58151880225055 27.73975650847134 22.62293779204679 30 22.853396484312917 26.897549191010523 27.859118217362283 22.38993610731428 31 26.566642296322197 31.117009440859533 21.247178867732604 21.06916939508567 32 27.392955910868118 28.536825709653833 22.91093168886487 21.15928669061318 33 24.67529164944849 26.03022982294415 27.255157506595886 22.039321021011478 34 22.726246860993673 26.979242823993133 26.14577704313551 24.14873327187768 35 23.23595791347468 26.496392129438316 27.325725547538067 22.941924409548935 36 24.69881432976255 26.97479258717696 29.22740710130646 19.09898598175403 37 23.65714104071967 29.935789440223783 25.332655202008965 21.074414317047584 38 25.669442766775802 27.12037890587749 25.520359833433993 21.689818493912714 39 25.48555262405035 25.45869226612416 26.495756381321723 22.559998728503768 40 26.135764010299116 24.438475476016404 25.579325471248293 23.846435042436188 41 20.930735242696844 22.470040370005403 29.509838202104326 27.089386185193426 42 26.89929749833116 24.34168282526463 24.52541403096093 24.233605645443276 43 22.311421214914652 26.33666041514352 26.59779395403541 24.754124415906418 44 21.826027527893448 24.249022537270733 25.999078165230937 27.925871769604882 45 23.072252773451158 27.097650910709177 25.384945484599005 24.44515083124066 46 20.844114561810613 27.04901617978957 29.508407768841984 22.598461489557835 47 20.988747258336247 25.181982898375665 27.14088178263772 26.688388060650368 48 22.410756858132807 22.168060014622206 31.762929527321276 23.65825359992371 49 24.655265583775705 20.976509107091772 29.25347277408691 25.114752535045614 50 20.674051940621126 24.52430147175689 28.144410184684826 26.65723640293716 51 21.66295813598652 23.684319272704155 29.650338535872088 25.002384055437236 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4103.0 1 3312.0 2 2521.0 3 1701.5 4 882.0 5 787.0 6 692.0 7 760.0 8 828.0 9 823.5 10 819.0 11 922.0 12 1025.0 13 1133.0 14 1241.0 15 1274.0 16 1307.0 17 1405.0 18 1503.0 19 1491.5 20 1480.0 21 1804.5 22 2129.0 23 2008.5 24 1888.0 25 2223.5 26 3427.5 27 4296.0 28 5424.0 29 6552.0 30 7260.5 31 7969.0 32 9115.0 33 10261.0 34 11955.0 35 13649.0 36 15124.0 37 16599.0 38 17380.0 39 18161.0 40 22178.5 41 26196.0 42 33698.5 43 41201.0 44 51530.0 45 61859.0 46 62913.5 47 63968.0 48 62277.0 49 60586.0 50 55869.5 51 51153.0 52 47759.5 53 44366.0 54 40052.5 55 35739.0 56 32161.5 57 28584.0 58 28285.5 59 27987.0 60 27152.0 61 26317.0 62 22667.0 63 19017.0 64 16182.0 65 13347.0 66 11384.0 67 9421.0 68 8022.5 69 6624.0 70 5496.5 71 4369.0 72 3521.5 73 2674.0 74 2253.5 75 1652.5 76 1472.0 77 1058.0 78 644.0 79 630.0 80 616.0 81 490.0 82 364.0 83 277.0 84 190.0 85 137.0 86 84.0 87 69.0 88 54.0 89 41.0 90 28.0 91 19.5 92 11.0 93 7.0 94 3.0 95 3.0 96 3.0 97 2.5 98 2.0 99 3.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 629180.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.10617296694963 #Duplication Level Percentage of deduplicated Percentage of total 1 79.82172848271001 24.031267642213574 2 9.190577812512416 5.533862505794167 3 3.3893906130957996 3.0612474015125275 4 1.5535621529484607 1.8708724356629205 5 0.8490898702074309 1.2781423248474861 6 0.5016228590209709 0.9061166734716684 7 0.35459222584405586 0.7472790418797768 8 0.23734521162734912 0.5716444795304189 9 0.1800410226787258 0.4878311552920998 >10 2.450678355675773 18.313025882740156 >50 1.0857596405410979 23.644155936063434 >100 0.37659469701229975 14.941816275159663 >500 0.005304150662145068 1.1360181361507107 >1k 0.003712905463501547 3.476720109681371 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGCT 4924 0.7826059315299277 TruSeq Adapter, Index 23 (95% over 22bp) AATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT 4014 0.6379732350042913 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCC 3623 0.5758288566070123 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3526 0.5604119647795544 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGT 3108 0.49397628659525095 No Hit AAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT 1524 0.24222003242315393 No Hit AAAAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT 1053 0.16736069169395085 No Hit AATGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC 972 0.1544867923328777 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 876 0.1392288375345688 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 768 0.12206363838647127 No Hit AATGACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT 742 0.11793127562859596 No Hit AACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTG 720 0.11443466098731683 TruSeq Adapter, Index 22 (95% over 21bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 685 0.10887186496710004 No Hit AATGATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCT 651 0.10346800597603231 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.357481165962046E-4 0.0 0.0 1.0300708859150005 0.0 2 6.357481165962046E-4 0.0 0.0 1.2637083187641056 0.0 3 6.357481165962046E-4 0.0 0.0 1.6618455767824787 0.0 4 6.357481165962046E-4 0.0 0.0 3.776184875552306 0.0 5 6.357481165962046E-4 0.0 0.0 4.224705171810928 0.0 6 6.357481165962046E-4 0.0 0.0 5.510187863568454 0.0 7 6.357481165962046E-4 0.0 0.0 6.549953908261546 0.0 8 6.357481165962046E-4 0.0 0.0 7.115928669061318 0.0 9 6.357481165962046E-4 0.0 0.0 8.48231030865571 0.0 10 6.357481165962046E-4 0.0 0.0 9.787342254998569 0.0 11 6.357481165962046E-4 0.0 0.0 11.72526145141295 0.0 12 6.357481165962046E-4 0.0 0.0 12.535681363043961 0.0 13 6.357481165962046E-4 0.0 0.0 13.074636828888394 0.0 14 6.357481165962046E-4 0.0 0.0 13.54429575002384 0.0 15 6.357481165962046E-4 0.0 0.0 13.8192568104517 0.0 16 6.357481165962046E-4 0.0 0.0 14.335961092215264 0.0 17 6.357481165962046E-4 0.0 0.0 14.96153723894593 0.0 18 6.357481165962046E-4 0.0 0.0 15.856352713055088 0.0 19 7.946851457452558E-4 0.0 0.0 16.173273149178296 0.0 20 7.946851457452558E-4 0.0 0.0 16.541053434629198 0.0 21 7.946851457452558E-4 0.0 0.0 16.91296608283798 0.0 22 7.946851457452558E-4 0.0 0.0 17.29981881178677 0.0 23 7.946851457452558E-4 0.0 0.0 17.689532407260245 0.0 24 7.946851457452558E-4 0.0 0.0 17.98992339235195 0.0 25 7.946851457452558E-4 0.0 0.0 18.23325598397915 0.0 26 7.946851457452558E-4 0.0 0.0 18.45227121014654 0.0 27 7.946851457452558E-4 0.0 0.0 18.708318764105663 0.0 28 7.946851457452558E-4 0.0 0.0 18.948631552179027 0.0 29 7.946851457452558E-4 0.0 0.0 19.192917765981118 0.0 30 7.946851457452558E-4 0.0 0.0 19.532089386185195 0.0 31 7.946851457452558E-4 0.0 0.0 19.800216154359642 0.0 32 7.946851457452558E-4 0.0 0.0 20.039734257287265 0.0 33 9.536221748943068E-4 0.0 0.0 20.31644362503576 0.0 34 9.536221748943068E-4 0.0 0.0 20.623827839410026 0.0 35 9.536221748943068E-4 0.0 0.0 20.930894179725993 0.0 36 9.536221748943068E-4 0.0 0.0 21.173432086207445 0.0 37 9.536221748943068E-4 0.0 0.0 21.419784481388472 0.0 38 9.536221748943068E-4 0.0 0.0 21.678851838901426 0.0 39 9.536221748943068E-4 0.0 0.0 21.978924949934836 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACACG 45 3.8380676E-10 45.000004 1 ATTCACG 45 3.8380676E-10 45.000004 1 AGCCGAA 20 7.0308504E-4 45.0 42 CGTATCA 20 7.0308504E-4 45.0 29 CGAGTTA 20 7.0308504E-4 45.0 26 GTCGACT 20 7.0308504E-4 45.0 13 GATCGCT 20 7.0308504E-4 45.0 28 GGTCGAC 20 7.0308504E-4 45.0 12 CACGGAA 20 7.0308504E-4 45.0 4 TTAGCGA 25 3.8887854E-5 45.0 27 GGCACTA 25 3.8887854E-5 45.0 8 CAGCCGA 25 3.8887854E-5 45.0 15 TCCGACA 25 3.8887854E-5 45.0 18 CTATACG 40 6.8066583E-9 45.0 1 CGTTGCC 20 7.0308504E-4 45.0 19 TAGAACG 20 7.0308504E-4 45.0 1 ATTACGG 50 2.1827873E-11 45.0 2 CGCGCGA 25 3.8887854E-5 45.0 33 TACGGTA 20 7.0308504E-4 45.0 25 CGCGATC 25 3.8887854E-5 45.0 35 >>END_MODULE