SRR3548765_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548765_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644428
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	14950	2.319886783317919	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGT	12943	2.0084478017714935	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT	12522	1.943118548542273	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	5905	0.9163164853172115	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT	3010	0.46708088413290544	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2712	0.42083832484001316	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCT	2338	0.36280236116369863	No Hit
AACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	1849	0.2869211145387848	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTAT	1525	0.23664396953577438	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT	1163	0.18047012234105286	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	906	0.1405897943602699	No Hit
AATGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	748	0.11607192735262899	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT	702	0.10893381417318926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	25	3.888891E-5	45.000004	25
CGAACCG	25	3.888891E-5	45.000004	1
GGTCGAT	25	3.888891E-5	45.000004	8
ACGTTAC	25	3.888891E-5	45.000004	43
CCAATCG	25	3.888891E-5	45.000004	1
GTTAGTA	25	3.888891E-5	45.000004	15
CGATTTA	25	3.888891E-5	45.000004	22
CTAAGTC	25	3.888891E-5	45.000004	19
TAAGTCG	25	3.888891E-5	45.000004	20
TAAGTAC	25	3.888891E-5	45.000004	28
TCGTGTG	25	3.888891E-5	45.000004	41
ACGATAT	25	3.888891E-5	45.000004	30
TACGATA	25	3.888891E-5	45.000004	29
CGTAGCG	50	2.1827873E-11	45.000004	1
CTACGAT	25	3.888891E-5	45.000004	28
CGCAGGT	25	3.888891E-5	45.000004	39
CGTACGA	25	3.888891E-5	45.000004	23
TACTATC	25	3.888891E-5	45.000004	13
CGTCGGA	25	3.888891E-5	45.000004	23
TAAGGGT	50	2.1827873E-11	45.000004	4