##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548765_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 644428 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17457031662187 31.0 31.0 34.0 28.0 34.0 2 31.384013419652778 31.0 31.0 34.0 30.0 34.0 3 31.304763293959915 31.0 31.0 34.0 28.0 34.0 4 35.29614169465014 37.0 35.0 37.0 33.0 37.0 5 34.9410872898136 35.0 35.0 37.0 32.0 37.0 6 35.006633789965676 36.0 35.0 37.0 32.0 37.0 7 34.859891252397475 36.0 35.0 37.0 32.0 37.0 8 35.26766683011911 37.0 35.0 37.0 33.0 37.0 9 35.76070872153289 39.0 35.0 39.0 32.0 39.0 10 35.658546804297764 37.0 35.0 39.0 30.0 39.0 11 36.082407964892894 37.0 35.0 39.0 31.0 39.0 12 35.78406586926701 37.0 35.0 39.0 31.0 39.0 13 35.650126934273494 37.0 35.0 39.0 30.0 39.0 14 36.6143649872445 38.0 35.0 40.0 31.0 41.0 15 36.78085061480879 38.0 35.0 40.0 31.0 41.0 16 36.717127437044944 38.0 35.0 40.0 31.0 41.0 17 36.68410900829883 38.0 35.0 40.0 31.0 41.0 18 36.451308757533816 38.0 35.0 40.0 31.0 41.0 19 36.47578627868435 38.0 35.0 40.0 30.0 41.0 20 36.52671516445592 38.0 35.0 40.0 31.0 41.0 21 36.63434394532826 38.0 35.0 40.0 31.0 41.0 22 36.6024427864711 38.0 35.0 40.0 31.0 41.0 23 36.561262080480674 38.0 35.0 40.0 31.0 41.0 24 36.177282799630056 38.0 35.0 40.0 30.0 41.0 25 36.24831323282042 38.0 35.0 40.0 30.0 41.0 26 36.15532379102088 38.0 35.0 40.0 30.0 41.0 27 36.12447938326702 38.0 35.0 40.0 30.0 41.0 28 36.03396190109679 38.0 35.0 40.0 30.0 41.0 29 35.828267859248825 38.0 34.0 40.0 29.0 41.0 30 35.86965960510717 38.0 35.0 40.0 30.0 41.0 31 35.706916831670874 38.0 34.0 40.0 29.0 41.0 32 35.65322735821535 38.0 34.0 40.0 29.0 41.0 33 35.460124327310425 38.0 34.0 40.0 28.0 41.0 34 35.58514682788457 38.0 34.0 40.0 29.0 41.0 35 35.45428348861316 38.0 34.0 40.0 28.0 41.0 36 35.35560062567114 38.0 34.0 40.0 27.0 41.0 37 35.22104564047496 38.0 34.0 40.0 27.0 41.0 38 34.94766676804856 37.0 34.0 40.0 26.0 41.0 39 34.850818089840914 37.0 33.0 40.0 26.0 41.0 40 34.47297448279715 37.0 33.0 40.0 24.0 41.0 41 34.80081871054641 37.0 33.0 40.0 26.0 41.0 42 34.781804949505606 37.0 33.0 40.0 26.0 41.0 43 34.808808742016176 37.0 33.0 40.0 26.0 41.0 44 34.77159744765901 37.0 33.0 40.0 26.0 41.0 45 34.38078264755721 37.0 33.0 40.0 24.0 41.0 46 34.26994792280907 36.0 33.0 40.0 24.0 41.0 47 34.0808903399604 36.0 33.0 40.0 24.0 41.0 48 34.06516942156455 36.0 33.0 39.0 24.0 41.0 49 33.97288448050054 36.0 33.0 39.0 24.0 41.0 50 33.791574853979036 36.0 33.0 39.0 23.0 40.0 51 31.80418293432315 35.0 30.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 7.0 10 7.0 11 9.0 12 9.0 13 13.0 14 26.0 15 52.0 16 125.0 17 246.0 18 454.0 19 962.0 20 1472.0 21 2172.0 22 2992.0 23 3861.0 24 4889.0 25 5850.0 26 7014.0 27 8758.0 28 11435.0 29 14482.0 30 18986.0 31 24209.0 32 32084.0 33 42350.0 34 64391.0 35 70270.0 36 68072.0 37 85213.0 38 102630.0 39 71383.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.615112937364607 38.4371877075484 19.25537065428566 23.69232870080133 2 21.810039290657762 38.07717852110709 18.272638681124967 21.84014350711018 3 19.7753666817705 28.562228829287367 28.127734983582343 23.534669505359794 4 26.15559845320191 29.123656948487653 17.831472251360896 26.889272346949543 5 16.39096997647526 38.42958406524856 18.69906335540976 26.48038260286642 6 21.518307708541528 33.86615727435803 24.698802659102338 19.9167323579981 7 73.13229716896224 12.996486806904727 7.816078755113061 6.055137269019968 8 75.30957686506483 5.675886212268865 6.131639221138746 12.882897701527558 9 70.98263886733662 11.03691956277505 10.893846946439323 7.086594623449012 10 40.191146256835516 28.99082597280069 13.802162537940625 17.01586523242317 11 31.660790654658083 23.923075968145394 24.95158497147858 19.464548405717938 12 29.873779537822685 22.502901798183817 31.43857808785466 16.18474057613884 13 23.93114513956563 32.26271980733301 22.92405047577076 20.882084577330595 14 16.40493585008721 31.71913697108133 33.79850037552682 18.077426803304636 15 15.225285058998056 28.806631617496446 30.22696096383149 25.74112235967401 16 16.51092131316454 25.152228022370227 35.007634677574536 23.3292159868907 17 16.004425630171255 26.80982204373491 28.19663329340128 28.989119032692557 18 20.795806513683452 26.590557828027332 26.925118089220206 25.688517569069003 19 21.048744002433164 29.79060500164487 29.07927650567635 20.08137449024561 20 24.054200003724233 30.973980025697205 24.04209624659388 20.92972372398468 21 19.55874046441185 28.573091175429994 26.038905820355417 25.829262539802738 22 19.647035820914052 29.75863866871086 25.55537624063511 25.038949269739984 23 21.607534123284523 27.838641399815028 21.76333120224447 28.790493274655976 24 17.796402390957564 33.33669548809176 26.379052430993067 22.487849689957606 25 19.283612754256488 25.25154090138852 28.365465187732376 27.099381156622616 26 23.108244831075 31.258728671007468 21.162022755063408 24.471003742854126 27 18.02683930555469 27.43270000682776 28.67333511268908 25.867125574928462 28 19.78607385153966 25.505254272005562 31.203485882053545 23.505185994401238 29 18.986294822695477 28.42753573711881 27.126381845605717 25.459787594580003 30 21.60132706834588 26.724475038328567 25.19614293606113 26.478054957264423 31 25.8390386513311 27.518512541354507 22.84413464343573 23.798314163878665 32 25.755553762406354 23.944490307683715 22.77678809735145 27.52316783255849 33 23.892816575319507 27.186900631257487 25.082709007057417 23.83757378636558 34 18.294984078904083 24.36020781219935 24.59995530920444 32.74485279969213 35 20.202877590669555 23.62544768383745 31.46278560211536 24.70888912337763 36 22.648457236495002 23.297249653956687 29.201245135220695 24.853047974327623 37 22.605783733791828 26.23458322729614 23.191884896373217 27.967748142538813 38 22.419727262005996 28.01600799468676 28.009180234254256 21.55508450905299 39 23.618619923404943 24.16251311240356 26.1757713817525 26.043095582439 40 21.55663627278765 28.695835686841665 25.60829138398704 24.139236656383645 41 18.885895709062922 20.950827710776068 31.41157739887156 28.751699181289453 42 24.28634385842949 21.896938059798767 26.837133085464938 26.979584996306805 43 22.495453332257444 22.59507656402267 28.189029651101443 26.720440452618444 44 21.49456572340122 21.79033189122757 26.888186112335283 29.82691627303593 45 25.921282129268125 27.652274575282267 24.80354671119194 21.622896584257667 46 19.54136071058365 23.837884139112514 34.326720750805364 22.294034399498468 47 21.89088618123359 26.948239368866655 25.140589794360267 26.020284655539488 48 20.890464101497763 20.75515030383534 34.13476757682783 24.219618017839075 49 23.25799003146977 20.890308925124295 30.14145878205168 25.710242261354253 50 21.150229350679982 22.8877392043797 26.456795794099573 29.505235650840746 51 18.8644813695246 22.965948096606603 32.120578249238086 26.048992284630714 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3222.0 1 2571.5 2 1921.0 3 1327.5 4 734.0 5 687.0 6 640.0 7 682.0 8 724.0 9 808.0 10 892.0 11 917.5 12 943.0 13 967.0 14 991.0 15 1068.5 16 1146.0 17 1193.0 18 1240.0 19 1312.5 20 1385.0 21 1483.0 22 1581.0 23 1940.5 24 2300.0 25 2290.5 26 3142.0 27 4003.0 28 4733.5 29 5464.0 30 6671.5 31 7879.0 32 8334.0 33 8789.0 34 10894.5 35 13000.0 36 13933.0 37 14866.0 38 17302.5 39 19739.0 40 22031.5 41 24324.0 42 31737.0 43 39150.0 44 62024.5 45 84899.0 46 81580.0 47 78261.0 48 70999.0 49 63737.0 50 57195.0 51 50653.0 52 47208.5 53 43764.0 54 38483.5 55 33203.0 56 30492.5 57 27782.0 58 24906.5 59 22031.0 60 22004.5 61 21978.0 62 19590.5 63 17203.0 64 15014.0 65 12825.0 66 11299.5 67 9774.0 68 8677.0 69 7580.0 70 6262.0 71 4944.0 72 3963.5 73 2983.0 74 2673.5 75 1913.0 76 1462.0 77 1155.0 78 848.0 79 640.5 80 433.0 81 352.0 82 271.0 83 192.0 84 113.0 85 84.0 86 55.0 87 38.0 88 21.0 89 16.5 90 12.0 91 10.0 92 8.0 93 8.0 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 644428.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.040541963783564 #Duplication Level Percentage of deduplicated Percentage of total 1 78.41062368684068 20.418551365236162 2 9.433959093298805 4.9133081530733005 3 3.308246960119892 2.5844563137468435 4 1.5842653899777224 1.6502051747793924 5 0.9132659655176256 1.1890970349578522 6 0.5962026985139551 0.9315264833744188 7 0.3899701259463873 0.7108523400530202 8 0.28184494337036986 0.5871516060093055 9 0.2592427988224658 0.6075740683390609 >10 3.18082787396803 20.4538527107965 >50 1.3077265832887228 24.34682817152357 >100 0.32243671027008836 11.522612984011465 >500 0.005393922662510772 0.8889599701606278 >1k 0.003595948441673848 1.9659811699637337 >5k 5.993247402789747E-4 0.9215780589533895 >10k+ 0.001797974220836924 6.307464395021379 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC 14950 2.319886783317919 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGT 12943 2.0084478017714935 No Hit AATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 12522 1.943118548542273 No Hit CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT 5905 0.9163164853172115 No Hit AATGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT 3010 0.46708088413290544 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2712 0.42083832484001316 No Hit AATGATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCT 2338 0.36280236116369863 No Hit AACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG 1849 0.2869211145387848 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTAT 1525 0.23664396953577438 No Hit AAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 1163 0.18047012234105286 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 906 0.1405897943602699 No Hit AATGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC 748 0.11607192735262899 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT 702 0.10893381417318926 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.103527469321631E-4 0.0 0.0 1.234738403669611 0.0 2 3.103527469321631E-4 0.0 0.0 1.4662615528810046 0.0 3 3.103527469321631E-4 0.0 0.0 2.1606758241417197 0.0 4 3.103527469321631E-4 0.0 0.0 5.760457335807879 0.0 5 3.103527469321631E-4 0.0 0.0 6.091603716784498 0.0 6 3.103527469321631E-4 0.0 0.0 7.653298739347142 0.0 7 3.103527469321631E-4 0.0 0.0 8.848467167782902 0.0 8 3.103527469321631E-4 0.0 0.0 9.458310315504603 0.0 9 3.103527469321631E-4 0.0 0.0 12.661461016591458 0.0 10 3.103527469321631E-4 0.0 0.0 13.954390560310848 0.0 11 3.103527469321631E-4 0.0 0.0 18.048098468719548 0.0 12 3.103527469321631E-4 0.0 0.0 18.783634478948773 0.0 13 3.103527469321631E-4 0.0 0.0 19.2181283246538 0.0 14 3.103527469321631E-4 0.0 0.0 19.807643367451444 0.0 15 3.103527469321631E-4 0.0 0.0 20.131186106128226 0.0 16 3.103527469321631E-4 0.0 0.0 20.63473343802566 0.0 17 3.103527469321631E-4 0.0 0.0 21.189333796793434 0.0 18 3.103527469321631E-4 0.0 0.0 22.040321028881426 0.0 19 3.103527469321631E-4 0.0 0.0 22.35858777086036 0.0 20 3.103527469321631E-4 0.0 0.0 22.694544619414426 0.0 21 3.103527469321631E-4 0.0 0.0 23.043381106966176 0.0 22 3.103527469321631E-4 0.0 0.0 23.376699957171322 0.0 23 3.103527469321631E-4 0.0 0.0 23.76215806886107 0.0 24 3.103527469321631E-4 0.0 0.0 24.01478520486385 0.0 25 3.103527469321631E-4 0.0 0.0 24.22427330904306 0.0 26 3.103527469321631E-4 0.0 0.0 24.4162264830206 0.0 27 3.103527469321631E-4 0.0 0.0 24.65178421794211 0.0 28 3.103527469321631E-4 0.0 0.0 24.868720788047696 0.0 29 3.103527469321631E-4 0.0 0.0 25.097295586163234 0.0 30 3.103527469321631E-4 0.0 0.0 25.446442426461918 0.0 31 3.103527469321631E-4 0.0 0.0 25.683241572371156 0.0 32 3.103527469321631E-4 0.0 0.0 25.906385197415382 0.0 33 3.103527469321631E-4 0.0 0.0 26.157770922430434 0.0 34 3.103527469321631E-4 0.0 0.0 26.382311134835856 0.0 35 3.103527469321631E-4 0.0 0.0 26.648283438956717 0.0 36 3.103527469321631E-4 0.0 0.0 26.861340599725647 0.0 37 3.103527469321631E-4 0.0 0.0 27.064311296219284 0.0 38 3.103527469321631E-4 0.0 0.0 27.28140304269833 0.0 39 3.103527469321631E-4 0.0 0.0 27.5015983166467 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATA 25 3.888891E-5 45.000004 25 CGAACCG 25 3.888891E-5 45.000004 1 GGTCGAT 25 3.888891E-5 45.000004 8 ACGTTAC 25 3.888891E-5 45.000004 43 CCAATCG 25 3.888891E-5 45.000004 1 GTTAGTA 25 3.888891E-5 45.000004 15 CGATTTA 25 3.888891E-5 45.000004 22 CTAAGTC 25 3.888891E-5 45.000004 19 TAAGTCG 25 3.888891E-5 45.000004 20 TAAGTAC 25 3.888891E-5 45.000004 28 TCGTGTG 25 3.888891E-5 45.000004 41 ACGATAT 25 3.888891E-5 45.000004 30 TACGATA 25 3.888891E-5 45.000004 29 CGTAGCG 50 2.1827873E-11 45.000004 1 CTACGAT 25 3.888891E-5 45.000004 28 CGCAGGT 25 3.888891E-5 45.000004 39 CGTACGA 25 3.888891E-5 45.000004 23 TACTATC 25 3.888891E-5 45.000004 13 CGTCGGA 25 3.888891E-5 45.000004 23 TAAGGGT 50 2.1827873E-11 45.000004 4 >>END_MODULE