SRR3548764_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548764_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	578538
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCC	7630	1.3188416318374938	No Hit
AATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCT	6776	1.1712281647877927	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGT	6149	1.0628515326564547	No Hit
CTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGCT	3799	0.6566552240302279	TruSeq Adapter, Index 20 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2779	0.48034874113714227	No Hit
AATGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTT	1377	0.23801375190566568	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCT	1265	0.21865460868603273	No Hit
AAACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCT	1247	0.21554331781144884	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1018	0.1759607839070208	No Hit
AACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTG	940	0.1624785234504907	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTT	835	0.14432932668208484	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	712	0.1230688390390951	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTAT	696	0.1203032471505761	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	682	0.11788335424812199	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	30	2.1636242E-6	45.000004	1
AAATCCG	30	2.1636242E-6	45.000004	1
GTATTCG	25	3.888394E-5	45.000004	11
ACGTTCC	25	3.888394E-5	45.000004	43
TTGTCGT	25	3.888394E-5	45.000004	43
AGGGTAC	100	0.0	45.000004	6
TAACGCG	60	0.0	45.000004	1
ATCGTTC	25	3.888394E-5	45.000004	35
AGTATAC	25	3.888394E-5	45.000004	26
ATATCGT	25	3.888394E-5	45.000004	33
CACTAGA	25	3.888394E-5	45.000004	26
TATTCGT	25	3.888394E-5	45.000004	12
TCGTACT	25	3.888394E-5	45.000004	42
CGGTCGT	25	3.888394E-5	45.000004	30
GCTACGA	50	2.1827873E-11	45.000004	9
CAATCGT	30	2.1636242E-6	45.000004	15
CCACGAT	25	3.888394E-5	45.000004	45
TATCGTT	25	3.888394E-5	45.000004	34
CAATACG	25	3.888394E-5	45.000004	1
CGGAATA	20	7.0303795E-4	45.0	31