SRR3548763_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548763_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	590053
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCC	7030	1.1914183980083144	No Hit
AATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCT	6441	1.0915968565535639	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGT	5954	1.009061897829517	No Hit
CTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGCT	3662	0.6206222152925245	TruSeq Adapter, Index 20 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3006	0.5094457616519195	No Hit
AATGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTT	1351	0.22896248303118533	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCT	1162	0.19693146208899875	No Hit
AAACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCT	1146	0.19421984126849623	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1016	0.17218792210191286	No Hit
AACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTG	896	0.15185076594814365	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	761	0.12897146527515324	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTT	728	0.12337874733286672	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	722	0.12236188952517825	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTAT	668	0.11321016925598208	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.210592E-7	45.000004	1
GACACGA	120	0.0	45.000004	25
TCACACG	55	1.8189894E-12	45.000004	1
GTTTAGC	35	1.210592E-7	45.000004	41
ACCGAGT	35	1.210592E-7	45.000004	31
ATAGACG	35	1.210592E-7	45.000004	1
CACGAAA	30	2.1636988E-6	45.000004	42
TATGCGG	70	0.0	45.000004	2
CCGTACC	30	2.1636988E-6	45.000004	30
TCCGTAC	30	2.1636988E-6	45.000004	29
TTACGAG	30	2.1636988E-6	45.000004	1
AACCGTA	20	7.0304924E-4	45.0	21
ATGGGCG	40	6.8048394E-9	45.0	5
GGTACCC	20	7.0304924E-4	45.0	35
GATCGCT	20	7.0304924E-4	45.0	23
TAGGTTA	20	7.0304924E-4	45.0	19
GACGTCG	20	7.0304924E-4	45.0	43
CGGTTAG	20	7.0304924E-4	45.0	1
CCAATGC	20	7.0304924E-4	45.0	26
ATAGCCG	20	7.0304924E-4	45.0	1