SRR3548762_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548762_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557216
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCC	8523	1.529568425888704	No Hit
AATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT	7909	1.4193777637397347	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGT	6948	1.246913225750876	No Hit
CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT	5068	0.9095216217768334	TruSeq Adapter, Index 19 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2866	0.5143427324412795	No Hit
AATGACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT	1616	0.29001320852236834	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT	1432	0.2569919026015046	No Hit
AAACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT	1328	0.23832768621145123	No Hit
AATGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC	1229	0.22056078791707345	No Hit
AACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG	1142	0.2049474530523172	TruSeq Adapter, Index 13 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	997	0.17892522827772353	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT	874	0.1568512031241027	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCATGGACTGTCGTAT	833	0.14949319473956238	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	704	0.12634238787113075	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	40	6.8048394E-9	45.000004	1
AGCGTTG	20	7.0301525E-4	45.000004	20
CTATGCA	20	7.0301525E-4	45.000004	22
AAGTACG	20	7.0301525E-4	45.000004	1
ATCTCGC	20	7.0301525E-4	45.000004	16
TGCCCAT	20	7.0301525E-4	45.000004	33
CTCAATG	30	2.1634805E-6	45.000004	1
CTCAACT	20	7.0301525E-4	45.000004	30
ACGTTAG	20	7.0301525E-4	45.000004	1
TAGACGT	20	7.0301525E-4	45.000004	28
ACCGCAT	20	7.0301525E-4	45.000004	21
TAGGTCG	30	2.1634805E-6	45.000004	33
CGGTTAT	20	7.0301525E-4	45.000004	6
ATTACGG	55	1.8189894E-12	45.000004	2
ATTACCG	20	7.0301525E-4	45.000004	1
GATTTCG	20	7.0301525E-4	45.000004	35
CACCTCG	30	2.1634805E-6	45.000004	1
CCACTTT	20	7.0301525E-4	45.000004	31
GTAGCAA	20	7.0301525E-4	45.000004	17
TTAAGCG	20	7.0301525E-4	45.000004	25