SRR3548761_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548761_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	568201
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCC	8130	1.4308316951219726	No Hit
AATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT	7226	1.271733066291682	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGT	6791	1.1951756508700266	No Hit
CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT	4834	0.8507552785017978	TruSeq Adapter, Index 19 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3091	0.5439976346398545	No Hit
AATGACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT	1596	0.2808865172711769	No Hit
AATGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC	1342	0.2361840264272678	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT	1313	0.2310801987324908	No Hit
AAACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT	1230	0.21647269188192209	No Hit
AACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG	1110	0.19535340486905162	TruSeq Adapter, Index 13 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1020	0.1795139396093988	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCATGGACTGTCGTAT	797	0.1402672645771479	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT	796	0.1400912705187073	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	760	0.13375548441484617	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	609	0.10718038159031752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGA	25	3.8883063E-5	45.000004	25
CACGGTA	25	3.8883063E-5	45.000004	3
TACCAAT	25	3.8883063E-5	45.000004	38
ACTTGCA	25	3.8883063E-5	45.000004	45
TAGGTCG	25	3.8883063E-5	45.000004	33
CTATAAT	25	3.8883063E-5	45.000004	31
ACTTACG	25	3.8883063E-5	45.000004	1
TCGATAG	25	3.8883063E-5	45.000004	1
CGAATGC	25	3.8883063E-5	45.000004	44
CGGCTAG	25	3.8883063E-5	45.000004	1
CGGTCTA	25	3.8883063E-5	45.000004	31
TAGGCAG	50	2.1827873E-11	45.000004	1
CACGTGA	50	2.1827873E-11	45.000004	43
GTTGGTA	25	3.8883063E-5	45.000004	33
TTATTAG	25	3.8883063E-5	45.000004	17
TATCCTC	25	3.8883063E-5	45.000004	45
GCATAAC	20	7.030272E-4	45.0	30
TCACGGA	20	7.030272E-4	45.0	3
GTCATAG	20	7.030272E-4	45.0	13
TACCCTT	20	7.030272E-4	45.0	43