SRR3548760_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548760_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398161
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	3489	0.8762786912831744	Illumina PCR Primer Index 5 (95% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3234	0.8122342469503543	No Hit
AAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCT	1629	0.4091309796790746	Illumina PCR Primer Index 5 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCT	1382	0.34709577281551934	Illumina PCR Primer Index 5 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCC	1178	0.29586021734926327	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTT	1082	0.2717493677180839	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGT	1008	0.2531639211273831	No Hit
ACCCTTGGGAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTC	786	0.1974075813552809	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	760	0.19087755958016983	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT	610	0.1532043570314521	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	602	0.15119511956218717	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	582	0.14617202588902478	No Hit
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	526	0.1321073636041702	Illumina PCR Primer Index 5 (95% over 23bp)
GAAAAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT	471	0.11829385600297367	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACCGG	65	0.0	45.000004	2
CGGGTTG	20	7.027726E-4	45.0	6
CGGGTTA	20	7.027726E-4	45.0	6
CTATGTG	20	7.027726E-4	45.0	25
AACGTAG	20	7.027726E-4	45.0	1
CGGGTAT	40	6.7957444E-9	45.0	6
CCTTAGC	20	7.027726E-4	45.0	31
GGTACGT	20	7.027726E-4	45.0	36
TCGCAAG	20	7.027726E-4	45.0	1
ACACGGT	20	7.027726E-4	45.0	3
GTATTCG	25	3.8861966E-5	45.0	26
GTCGAGC	20	7.027726E-4	45.0	29
CTCAACC	25	3.8861966E-5	45.0	36
CTATCTC	20	7.027726E-4	45.0	7
CATGCGG	55	1.8189894E-12	45.0	2
CGTGCAC	25	3.8861966E-5	45.0	35
ACGCACC	20	7.027726E-4	45.0	21
GCAACTA	20	7.027726E-4	45.0	40
TAGGTTA	20	7.027726E-4	45.0	41
TTTCGAT	20	7.027726E-4	45.0	13