SRR3548755_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548755_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382240
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGCT	2918	0.7633947258267058	Illumina PCR Primer Index 8 (95% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2839	0.7427270824612808	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC	2478	0.6482838007534533	No Hit
AATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT	2022	0.5289870238593554	RNA PCR Primer, Index 40 (95% over 22bp)
AATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGT	1988	0.5200920887400585	No Hit
AAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT	954	0.24958141481791546	RNA PCR Primer, Index 40 (95% over 22bp)
AAAAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT	684	0.17894516534114693	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	682	0.17842193386354124	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	628	0.16429468396818753	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	552	0.1444118878191712	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	480	0.12557555462536626	No Hit
AATGACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT	473	0.12374424445374634	No Hit
TTAGCGGGGCTTATGAAATTTCAACAAAGAATATGCCTAATTTCTACTCTT	418	0.10935537881958977	No Hit
CGCGACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	389	0.10176852239430724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACA	20	7.027371E-4	45.000004	31
CTTCGAA	20	7.027371E-4	45.000004	44
GATACGT	20	7.027371E-4	45.000004	9
GATACCC	20	7.027371E-4	45.000004	43
TCTTGCG	40	6.7939254E-9	45.000004	1
GTCGAGG	20	7.027371E-4	45.000004	34
ATCTACG	20	7.027371E-4	45.000004	1
TACCACG	20	7.027371E-4	45.000004	14
CGAAAGT	20	7.027371E-4	45.000004	43
TCTCTCG	20	7.027371E-4	45.000004	10
CCGGCTA	20	7.027371E-4	45.000004	19
ATAATCG	20	7.027371E-4	45.000004	42
TATGGAT	20	7.027371E-4	45.000004	25
TTAGAAT	20	7.027371E-4	45.000004	29
CGTTGGA	20	7.027371E-4	45.000004	38
TAGCGCG	20	7.027371E-4	45.000004	1
CTCCCGA	20	7.027371E-4	45.000004	25
ATAGCGC	20	7.027371E-4	45.000004	31
ACATTCC	20	7.027371E-4	45.000004	17
GCGCCTA	20	7.027371E-4	45.000004	35