SRR3548753_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548753_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	563999
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC	10797	1.914365096392015	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGT	10154	1.8003578020528406	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	7943	1.408335830382678	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	4813	0.8533703073941621	TruSeq Adapter, Index 21 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2761	0.48953987507070046	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT	1700	0.30141897414711727	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	1589	0.2817380881880996	No Hit
TAGGGGGGCTGGAAAGATGGCTCAGAGGTTAAGAACACTGACTACTTTTCC	1197	0.21223441885535257	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTAT	1156	0.20496490242003976	No Hit
AACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	1137	0.20159610212074844	No Hit
AAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	1072	0.19007125899159397	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	812	0.14397188647497602	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	681	0.12074489493775699	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT	592	0.10496472511476085	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGG	590	0.1046101145569407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCATA	20	7.030225E-4	45.000004	15
CTTAACG	20	7.030225E-4	45.000004	1
AGCGTCG	40	6.8048394E-9	45.000004	1
CCTTACT	20	7.030225E-4	45.000004	17
AGTCCCG	20	7.030225E-4	45.000004	40
CATATGG	35	1.2104647E-7	45.000004	2
ACGCCCG	20	7.030225E-4	45.000004	23
TACTTTA	20	7.030225E-4	45.000004	28
CTTCCGT	20	7.030225E-4	45.000004	42
ACGTTTA	20	7.030225E-4	45.000004	16
GAATGCG	20	7.030225E-4	45.000004	1
AACCCAT	20	7.030225E-4	45.000004	18
TAGCGCG	20	7.030225E-4	45.000004	1
GCACGTC	20	7.030225E-4	45.000004	37
TAAACCG	20	7.030225E-4	45.000004	1
ATTCGTT	20	7.030225E-4	45.000004	17
ATTAACG	70	0.0	45.000004	1
GATCACG	20	7.030225E-4	45.000004	1
ATAGACG	35	1.2104647E-7	45.000004	1
CTAAGCG	40	6.8048394E-9	45.000004	1