##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548752_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 435099 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.373041537673036 31.0 31.0 34.0 30.0 34.0 2 31.556820401793615 31.0 31.0 34.0 30.0 34.0 3 31.721674837220956 31.0 31.0 34.0 30.0 34.0 4 35.50338658558167 37.0 35.0 37.0 33.0 37.0 5 35.08285010997497 37.0 35.0 37.0 32.0 37.0 6 35.08860742038019 37.0 35.0 37.0 32.0 37.0 7 35.0177752649397 37.0 35.0 37.0 32.0 37.0 8 35.38051340039853 37.0 35.0 37.0 33.0 37.0 9 36.30886533869303 39.0 37.0 39.0 32.0 39.0 10 35.99516202059761 38.0 35.0 39.0 31.0 39.0 11 36.27449844747977 38.0 35.0 39.0 32.0 39.0 12 35.75871238499744 37.0 35.0 39.0 31.0 39.0 13 35.529456514494406 37.0 35.0 39.0 30.0 39.0 14 36.485487210956585 38.0 35.0 40.0 31.0 41.0 15 36.60049781773803 38.0 35.0 40.0 31.0 41.0 16 36.58579771500279 38.0 35.0 40.0 31.0 41.0 17 36.54041264172062 38.0 35.0 40.0 31.0 41.0 18 36.2759394988267 38.0 35.0 40.0 30.0 41.0 19 36.32263691711542 38.0 35.0 40.0 30.0 41.0 20 36.35907230308504 38.0 35.0 40.0 31.0 41.0 21 36.472782056497486 38.0 35.0 40.0 31.0 41.0 22 36.433515131039144 38.0 35.0 40.0 31.0 41.0 23 36.39146952762475 38.0 35.0 40.0 31.0 41.0 24 36.064566914656204 38.0 34.0 40.0 30.0 41.0 25 36.1354335450093 38.0 35.0 40.0 30.0 41.0 26 36.05604241793247 38.0 35.0 40.0 30.0 41.0 27 36.00860493818648 38.0 34.0 40.0 30.0 41.0 28 35.93455052758108 38.0 34.0 40.0 30.0 41.0 29 35.73862500258562 38.0 34.0 40.0 30.0 41.0 30 35.83897227987194 38.0 34.0 40.0 30.0 41.0 31 35.48759018062556 37.0 34.0 40.0 29.0 41.0 32 35.60545301184328 38.0 34.0 40.0 30.0 41.0 33 35.549491035373556 38.0 34.0 40.0 29.0 41.0 34 35.26565218490504 37.0 34.0 40.0 28.0 41.0 35 35.358116198842104 37.0 34.0 40.0 29.0 41.0 36 35.12486353680427 37.0 34.0 40.0 27.0 41.0 37 35.11518757799949 37.0 34.0 40.0 27.0 41.0 38 35.03430713469808 37.0 34.0 40.0 27.0 41.0 39 34.901073089113055 37.0 34.0 40.0 27.0 41.0 40 34.6976757013921 37.0 33.0 40.0 26.0 41.0 41 34.68800893589735 37.0 33.0 40.0 26.0 41.0 42 34.80077637503189 37.0 34.0 40.0 26.0 41.0 43 34.81750819928338 37.0 34.0 40.0 27.0 41.0 44 34.64638162808924 37.0 33.0 40.0 26.0 41.0 45 34.36145337038237 36.0 33.0 40.0 25.0 41.0 46 34.27013852019885 36.0 33.0 39.0 24.0 41.0 47 34.12545190864608 36.0 33.0 39.0 24.0 41.0 48 34.14207111484972 36.0 33.0 39.0 24.0 41.0 49 33.99622154957837 36.0 33.0 39.0 24.0 41.0 50 33.6857198017003 35.0 33.0 39.0 23.0 40.0 51 31.639417695742807 35.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 9.0 11 5.0 12 9.0 13 12.0 14 22.0 15 51.0 16 68.0 17 173.0 18 290.0 19 566.0 20 936.0 21 1432.0 22 2081.0 23 2616.0 24 3301.0 25 3956.0 26 4632.0 27 5697.0 28 7325.0 29 9462.0 30 12106.0 31 16082.0 32 21262.0 33 29288.0 34 47775.0 35 51818.0 36 43653.0 37 55518.0 38 67766.0 39 47183.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.09703308902112 38.738080298966445 18.27170368123117 23.893182930781272 2 20.12576448118704 38.2085456413368 18.77411807427735 22.89157180319881 3 19.279290460332017 29.704044366914196 27.168989126612566 23.847676046141224 4 25.721042797156507 30.732316093578703 17.498546307851775 26.048094801413015 5 16.801693407707212 38.98308201122043 18.475335498357843 25.739889082714505 6 19.989243827266897 34.91481249095034 24.421338591906668 20.674605089876096 7 73.79010294208904 12.558291331398141 8.050351759024958 5.601253967487859 8 76.1339373338022 5.709735025821709 5.721226663357075 12.435100977019022 9 72.20816411897063 9.959572419150584 10.753414740093634 7.078848721785157 10 41.90379660720893 28.538562488077424 13.325243220508437 16.232397684205203 11 34.967903856363726 22.88651548268325 24.073371807335803 18.072208853617223 12 32.04443126736673 22.290329327348488 30.805632741054335 14.85960666423044 13 24.745402770403977 34.8915993831289 20.795497116748145 19.567500729718983 14 15.831799199722363 34.45284866202864 32.09016798475749 17.625184153491507 15 13.774106582639813 28.701284075578204 33.86010999795449 23.664499343827497 16 16.39098228219325 24.301365896037453 37.43929542471943 21.86835639704987 17 16.370527167380295 25.69162420506597 28.612798466555887 29.32505016099784 18 19.391219009926477 27.385721410529555 27.37537893674773 25.847680642796238 19 21.838707972208624 29.855274316879605 29.217258600916114 19.088759109995657 20 25.581304484726463 30.70243783598675 24.142551465298702 19.573706213988082 21 20.054286495717065 29.91227283905502 25.316766988662348 24.716673676565563 22 18.989471361690097 31.568677473402605 24.459490828524082 24.982360336383213 23 21.568884322878244 28.585448369221716 21.17587031916874 28.6697969887313 24 17.50750978512936 33.042365070937876 26.959151825216786 22.49097331871597 25 18.410982328159797 25.503391182236683 28.766786409529786 27.31884008007373 26 22.797110542658107 31.812759854653766 21.939374717018424 23.450754885669696 27 16.54818788367705 29.168534057766166 28.05131705657793 26.23196100197886 28 19.91569734704056 27.967198269819054 30.610045070202414 21.507059312937976 29 21.194027106474618 29.240012043236135 27.109002778677954 22.45695807161129 30 24.4820144380934 25.294703044594446 24.114282036961704 26.109000480350446 31 26.926285741865648 32.74680015352828 19.307559888669015 21.019354215937064 32 25.006492775207484 23.81205196978159 22.105084130278396 29.076371124732532 33 28.680828960765254 25.859861778583728 24.318373519589795 21.140935741061227 34 21.24872730114296 29.19542448959892 23.410074488794503 26.145773720463616 35 22.024642667530838 23.007637342306005 30.888832196810377 24.078887793352777 36 27.189214408674804 28.268509005996336 24.92559164695851 19.616684938370348 37 19.823074748505512 29.533968131390786 21.54590104780751 29.09705607229619 38 24.547286939294274 30.186922976150253 24.060271340545487 21.205518744009986 39 21.60243990448151 28.162785940670975 24.68036010195381 25.55441405289371 40 26.301370492692467 26.41214987853339 23.73252983803686 23.55394979073728 41 18.828128770693567 23.90766239407583 31.56890730615331 25.69530152907729 42 25.510975663010026 23.683345629385496 24.933635793233265 25.872042914371214 43 23.273783667625068 23.389619373981553 26.487075355263972 26.8495216031294 44 20.860309952447604 23.995458504846024 25.427086709001863 29.717144833704513 45 26.453519773660705 28.323209200664678 23.2464335702909 21.976837455383716 46 19.42247626402267 24.667719300664906 32.99524935704288 22.914555078269544 47 22.498557799489312 26.88629484324257 24.891576399853825 25.72357095741429 48 21.186902291202692 20.30434452848662 34.540644772798835 23.968108407511853 49 23.268957179860216 20.04210535992958 30.460653782242662 26.228283677967546 50 20.413515085072593 24.69874672201039 24.760801564701367 30.126936628215645 51 19.239989059961065 22.827448465751473 31.38274277808039 26.549819696207074 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2971.0 1 2331.0 2 1691.0 3 1178.0 4 665.0 5 602.5 6 540.0 7 584.0 8 628.0 9 690.0 10 752.0 11 807.5 12 863.0 13 947.5 14 1032.0 15 1070.5 16 1109.0 17 1050.0 18 991.0 19 1002.5 20 1014.0 21 943.5 22 873.0 23 1005.5 24 1138.0 25 1508.5 26 2257.5 27 2636.0 28 3065.0 29 3494.0 30 4097.0 31 4700.0 32 4808.0 33 4916.0 34 5991.5 35 7067.0 36 7443.0 37 7819.0 38 8847.5 39 9876.0 40 12389.0 41 14902.0 42 20962.0 43 27022.0 44 43742.5 45 60463.0 46 56950.0 47 53437.0 48 49184.0 49 44931.0 50 41824.5 51 38718.0 52 34451.5 53 30185.0 54 27225.5 55 24266.0 56 20825.5 57 17385.0 58 16667.0 59 15949.0 60 14896.5 61 13844.0 62 12735.5 63 11627.0 64 10529.5 65 9432.0 66 7708.5 67 5985.0 68 4780.5 69 3576.0 70 2896.0 71 2216.0 72 1957.5 73 1699.0 74 1433.0 75 941.0 76 715.0 77 536.0 78 357.0 79 300.0 80 243.0 81 181.0 82 119.0 83 90.5 84 62.0 85 48.0 86 34.0 87 63.5 88 93.0 89 53.5 90 14.0 91 8.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 435099.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.330888942552267 #Duplication Level Percentage of deduplicated Percentage of total 1 79.13052894479677 21.627076985556585 2 8.982440510979002 4.909961680772991 3 3.1502901866171724 2.583006936817386 4 1.4901558505017647 1.6290913622863303 5 0.880405472384803 1.2031132095082162 6 0.5741879824796703 0.9415840788780012 7 0.3866972121856212 0.7398144992447848 8 0.31355813433257124 0.6855858037181912 9 0.24126279570732284 0.5934534007901865 >10 3.38356213208139 22.834735117214038 >50 1.2063134477565554 23.297228732347058 >100 0.24966905504090375 9.185772348871982 >500 0.003362546195837088 0.6754751183232942 >1k 0.005043819293755632 2.954859012502002 >5k 0.002521909646877816 6.1392417131689605 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC 9631 2.2135192220621054 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT 8641 1.9859847988618684 No Hit AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT 8449 1.9418569107260646 No Hit CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT 4475 1.0285015594152136 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2585 0.5941176605783971 No Hit AATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT 1915 0.4401297176044992 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT 1572 0.36129708411189176 No Hit AACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG 1176 0.2702833148317969 No Hit AAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT 1138 0.2615496703049191 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTAT 893 0.20524064638162812 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT 733 0.16846740626845844 No Hit AATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC 667 0.15329844472177595 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 647 0.14870178970762976 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.596655014146206E-4 0.0 0.0 1.4017499465638854 0.0 2 4.596655014146206E-4 0.0 0.0 1.7037501809932911 0.0 3 4.596655014146206E-4 0.0 0.0 2.393708098616637 0.0 4 4.596655014146206E-4 0.0 0.0 6.249152491731767 0.0 5 4.596655014146206E-4 0.0 0.0 6.662851443004925 0.0 6 4.596655014146206E-4 0.0 0.0 8.459224222533262 0.0 7 4.596655014146206E-4 0.0 0.0 9.868788482621197 0.0 8 4.596655014146206E-4 0.0 0.0 10.696875883419635 0.0 9 4.596655014146206E-4 0.0 0.0 14.003249835095001 0.0 10 4.596655014146206E-4 0.0 0.0 15.665859953711683 0.0 11 4.596655014146206E-4 0.0 0.0 19.751137097534123 0.0 12 4.596655014146206E-4 0.0 0.0 20.63760201701222 0.0 13 4.596655014146206E-4 0.0 0.0 21.12277895375535 0.0 14 4.596655014146206E-4 0.0 0.0 21.71942477459153 0.0 15 4.596655014146206E-4 0.0 0.0 22.053141928618544 0.0 16 4.596655014146206E-4 0.0 0.0 22.607728356075285 0.0 17 4.596655014146206E-4 0.0 0.0 23.23540159825695 0.0 18 4.596655014146206E-4 0.0 0.0 24.254250182142457 0.0 19 4.596655014146206E-4 0.0 0.0 24.600378304707665 0.0 20 4.596655014146206E-4 0.0 0.0 24.96650187658441 0.0 21 4.596655014146206E-4 0.0 0.0 25.312859831900326 0.0 22 4.596655014146206E-4 0.0 0.0 25.68863637930678 0.0 23 6.894982521219308E-4 0.0 0.0 26.085557539778303 0.0 24 6.894982521219308E-4 0.0 0.0 26.348256373836758 0.0 25 6.894982521219308E-4 0.0 0.0 26.585213939815997 0.0 26 6.894982521219308E-4 0.0 0.0 26.80010756172733 0.0 27 6.894982521219308E-4 0.0 0.0 27.05154459100113 0.0 28 6.894982521219308E-4 0.0 0.0 27.27287352993227 0.0 29 6.894982521219308E-4 0.0 0.0 27.49673062912119 0.0 30 6.894982521219308E-4 0.0 0.0 27.904913594377373 0.0 31 6.894982521219308E-4 0.0 0.0 28.156120790900463 0.0 32 6.894982521219308E-4 0.0 0.0 28.387102705361308 0.0 33 6.894982521219308E-4 0.0 0.0 28.61854428532357 0.0 34 6.894982521219308E-4 0.0 0.0 28.86032833906766 0.0 35 6.894982521219308E-4 0.0 0.0 29.12095867836975 0.0 36 6.894982521219308E-4 0.0 0.0 29.34205778455018 0.0 37 6.894982521219308E-4 0.0 0.0 29.5783258522773 0.0 38 6.894982521219308E-4 0.0 0.0 29.860790302896582 0.0 39 6.894982521219308E-4 0.0 0.0 30.107400844405525 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTGC 30 2.16238E-6 45.000004 43 CAAACGT 30 2.16238E-6 45.000004 41 GTACACT 35 1.2095916E-7 45.000004 18 CAAAACG 30 2.16238E-6 45.000004 1 TAAACCG 30 2.16238E-6 45.000004 1 CATTCTC 35 1.2095916E-7 45.000004 26 ACGTGCA 30 2.16238E-6 45.000004 44 ACCACGC 30 2.16238E-6 45.000004 25 CCGGTGT 30 2.16238E-6 45.000004 37 ATTATCG 30 2.16238E-6 45.000004 21 TGGGACG 60 0.0 45.000004 6 GCTAACG 35 1.2095916E-7 45.000004 1 ATCGCGG 30 2.16238E-6 45.000004 2 CCTTGCG 30 2.16238E-6 45.000004 1 ATCGCAA 30 2.16238E-6 45.000004 24 GCGTAAG 30 2.16238E-6 45.000004 1 TACAATG 30 2.16238E-6 45.000004 1 CACCACG 30 2.16238E-6 45.000004 24 TCTGCGT 25 3.8867947E-5 45.0 23 GTTGAAA 20 7.028447E-4 45.0 23 >>END_MODULE