SRR3548748_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548748_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	638129
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	4486	0.702992655090115	No Hit
AATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	3898	0.6108482767590879	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCC	3451	0.5407997442523377	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3062	0.47984028307755955	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGT	2978	0.46667680045884136	No Hit
AAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	1379	0.21610050632395644	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT	980	0.15357396388504518	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	895	0.14025377313991372	No Hit
AATGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	888	0.13915681625502055	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	725	0.11361339164965077	No Hit
AATGACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT	671	0.10515115282333197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCCTC	30	2.1639771E-6	45.000004	15
AACGGTA	30	2.1639771E-6	45.000004	4
CGTAGCA	30	2.1639771E-6	45.000004	32
CGAGGTT	30	2.1639771E-6	45.000004	35
CACTACG	35	1.2107921E-7	45.000004	1
CGCTAAG	35	1.2107921E-7	45.000004	1
GAACGTA	30	2.1639771E-6	45.000004	29
CTCGATG	35	1.2107921E-7	45.000004	1
CGGTATC	35	1.2107921E-7	45.000004	6
AATAGCG	35	1.2107921E-7	45.000004	1
CGCAAAT	35	1.2107921E-7	45.000004	1
GATTACG	35	1.2107921E-7	45.000004	1
GCGTAGC	35	1.2107921E-7	45.000004	1
TAACTGC	35	1.2107921E-7	45.000004	37
ACGGTAT	35	1.2107921E-7	45.000004	5
GTGTTAC	25	3.8888484E-5	45.0	35
CGGAACG	50	2.1827873E-11	45.0	1
GTCGCAT	20	7.030926E-4	45.0	30
CATATCG	20	7.030926E-4	45.0	1
GTCGACT	25	3.8888484E-5	45.0	24